Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01120 151 / 4e-45 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT5G43760 141 / 2e-41 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT3G10280 132 / 2e-38 KCS14 3-ketoacyl-CoA synthase 14 (.1) AT2G46720 132 / 3e-38 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT1G04220 132 / 5e-38 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT2G26640 130 / 2e-37 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT2G26250 126 / 1e-35 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) AT1G68530 125 / 2e-35 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT4G34510 125 / 2e-35 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G15090 124 / 3e-35 KCS8 3-ketoacyl-CoA synthase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010108 [exp] 182 / 1e-56 AT1G01120 868 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10012611 [exp] 176 / 2e-54 AT1G01120 863 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10002691 [exp] 162 / 4e-49 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10030209 [exp] 160 / 3e-48 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10021895 [exp] 134 / 4e-39 AT1G04220 694 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10041177 [exp] 134 / 8e-39 AT1G04220 782 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10039399 [exp] 134 / 9e-39 AT1G04220 689 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10039401 [exp] 131 / 4e-38 AT1G04220 644 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10019448 [exp] 130 / 2e-37 AT2G26640 482 / 2e-168 3-ketoacyl-CoA synthase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G104300 [exp] 157 / 2e-47 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.002G178000 [exp] 149 / 2e-44 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.018G032200 [exp] 136 / 1e-39 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 134 / 7e-39 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079300 [exp] 134 / 7e-39 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080200 [exp] 134 / 1e-38 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079700 [exp] 134 / 1e-38 AT2G26640 756 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079500 [exp] 134 / 1e-38 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080400 [exp] 134 / 1e-38 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G160000 [exp] 133 / 2e-38 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10000101 pacid=23180358 polypeptide=Lus10000101 locus=Lus10000101.g ID=Lus10000101.BGIv1.0 annot-version=v1.0 ATGGAGCCGTCGAGGATGACGCTTCATAGATTCGGGAACACGTCGAGCAGCTCGCTCTGGTATGAGCTGGCGTACACCGAAGCTAAAGGACGGGTGGGGC ATGGGGACCGGGTGTGGCAGATTGCTTTCGGGTCAGGGTTTAAGTGTAACAGCGCGGTGTGGAAAGCGCTGAGGCCCATATCGGTACAGGAGATGAAAGG GAACCCATGGGTTGACTCTATTGACAGGTACCCGGTCAAACTTCCAAGCGCGTGA
AA sequence Show only first row Show all	>Lus10000101 pacid=23180358 polypeptide=Lus10000101 locus=Lus10000101.g ID=Lus10000101.BGIv1.0 annot-version=v1.0 MEPSRMTLHRFGNTSSSSLWYELAYTEAKGRVGHGDRVWQIAFGSGFKCNSAVWKALRPISVQEMKGNPWVDSIDRYPVKLPSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10000101 [exp]	0	1
					Lus10039759 [exp]	7.8	0.8689
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10027726 [exp]	11.5	0.8289
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10011633 [exp]	12.6	0.8580
					Lus10040066 [exp]	16.5	0.8523
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10010108 [exp]	17.7	0.7959
AT1G14750		SDS	SOLO DANCERS, Cyclin family pr...		Lus10021812 [exp]	19.0	0.8017
					Lus10019410 [exp]	20.6	0.8546
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002933 [exp]	27.2	0.8453
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10003530 [exp]	29.6	0.8390
AT3G02750			Protein phosphatase 2C family ...		Lus10022683 [exp]	29.9	0.8365

Compare expression of checked genes

Lus10000101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.