Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30690 174 / 1e-49 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G72160 166 / 5e-47 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G09160 169 / 7e-47 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT3G51670 157 / 3e-44 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G22530 127 / 2e-32 PATL2 PATELLIN 2 (.1) AT1G72150 117 / 7e-29 PATL1 PATELLIN 1 (.1) AT2G21520 46 / 3e-05 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT3G24840 42 / 0.0004 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G75370 42 / 0.0005 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 42 / 0.0005 ATSFH12 SEC14-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033895 [exp] 586 / 0 AT1G30690 218 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10003552 [exp] 561 / 0 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10038435 [exp] 192 / 1e-56 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10031752 [exp] 176 / 1e-49 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10012219 [exp] 162 / 6e-47 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10001269 [exp] 164 / 1e-46 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10001542 [exp] 154 / 4e-42 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10023378 [exp] 137 / 2e-37 AT1G30690 247 / 1e-77 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001539 [exp] 122 / 5e-32 AT1G72160 490 / 1e-173 Sec14p-like phosphatidylinositol transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224800 [exp] 268 / 2e-86 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.001G461400 [exp] 197 / 2e-58 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.013G106000 [exp] 176 / 9e-50 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.016G127700 [exp] 168 / 3e-48 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.019G079500 [exp] 171 / 9e-48 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 169 / 2e-47 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G105900 [exp] 168 / 3e-47 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079300 [exp] 166 / 2e-46 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 165 / 7e-46 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 165 / 7e-46 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10000102 pacid=23174296 polypeptide=Lus10000102 locus=Lus10000102.g ID=Lus10000102.BGIv1.0 annot-version=v1.0 ATGCAATTCCCGGCGAATCATTCATCTATTCATCCGGTCACCACTGGAGCAGAATTGTATTCAACCATGGGGGAGAAACTAGAGAGGAAAAAACCACATG ATCATGTGTCCGAATCAAAAGACAAACAGGATAAACAACAACAACAAGATGACGACGACGAGGAGGAGGAAATCGGCGAACATGAAAATGTAGCAGCAAT CATAGACGAAGAAATCTCGACGTACTGCGGTAAACACATGGAAATTCCAAAAGATCCCATAGAGCATAAGATGCGGAAGAAGCGAGCGTTGATGAAACTG AAAACCATGGTGGAGGATGCAATCTCAGGTAATTACCTTTTGGAGAAACCAACAAAATCAATTTTCAAGAAGAATAAAACCAAGGAATTGCAACAATTAG AAATGGACAATACTACCCTTTGGGGGGTTCCTCTGCTTTCCAGTAAAGGCCATGAAGGAACTGAAATAGTGCTCTTGAAGTTCCTCAAGGCGAATGACTA CAAGGTCCATTCAGCTTATTACATGCTCCGCAAGGTCTTGAAATGGAGGAAGGCGTATAAAGTCGATTCTATCCTCGATGAGGATCTTCTGAACCACAAT GATGATAATGTGGTTTTGAATAATGTTGTCCGTACCGGGACTAGTGTGGATCGACAAGGCCATCCGTTGTACTATACCATGTATGGTGCGTTCAAGGACA AGAAATTGCGTACCAAAGTGTTTGGAACGGAAGAGAGTCGAGAGAAATTCACGAGGTTGAAGATTCAGTACCTCGAAAAGAGCATCAAACAGTTGAGTTT CAAGTCCGGTGAGGCGAATTCGGTTGTGCAGATCACAGATTTGAAAATTTTTCCAGCACCGATGAAGGAGCTCAACTCTGTCACCAAGAAGATTCTTACA TTGTTCCAATCTAACTATCCTGGCATCATCAATAAGAATATACTGATTAATGTTCCATTCTGGTACTACACGTCACGAGTTGTGACATTAAAACTCAAGA ATCCAAGAGCAAAGAAGAAGTTTATTCTAGCTAGGCCTTCAAATGTCACACAAACCCTTTTAAAGTAA
AA sequence Show only first row Show all	>Lus10000102 pacid=23174296 polypeptide=Lus10000102 locus=Lus10000102.g ID=Lus10000102.BGIv1.0 annot-version=v1.0 MQFPANHSSIHPVTTGAELYSTMGEKLERKKPHDHVSESKDKQDKQQQQDDDDEEEEIGEHENVAAIIDEEISTYCGKHMEIPKDPIEHKMRKKRALMKL KTMVEDAISGNYLLEKPTKSIFKKNKTKELQQLEMDNTTLWGVPLLSSKGHEGTEIVLLKFLKANDYKVHSAYYMLRKVLKWRKAYKVDSILDEDLLNHN DDNVVLNNVVRTGTSVDRQGHPLYYTMYGAFKDKKLRTKVFGTEESREKFTRLKIQYLEKSIKQLSFKSGEANSVVQITDLKIFPAPMKELNSVTKKILT LFQSNYPGIINKNILINVPFWYYTSRVVTLKLKNPRAKKKFILARPSNVTQTLLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09160			SEC14 cytosolic factor family ...		Lus10000102 [exp]	0	1
AT1G63060			unknown protein		Lus10000001 [exp]	10.0
AT5G26150			protein kinase family protein ...		Lus10000068 [exp]	82.9
AT5G35110			unknown protein		Lus10000078 [exp]	88.8
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Lus10000082 [exp]	91.0
AT2G46490			unknown protein		Lus10000088 [exp]	94.3
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10000107 [exp]	104.0
					Lus10000109 [exp]	105.0
AT3G07565			Protein of unknown function (D...		Lus10000123 [exp]	111.6
					Lus10000134 [exp]	116.5
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10000140 [exp]	119.1

Compare expression of checked genes

Lus10000102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.