Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37970 208 / 7e-69 SOUL-1 SOUL heme-binding family protein (.1) AT5G20140 46 / 4e-06 SOUL heme-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027752 [exp] 301 / 2e-105 AT2G37970 275 / 2e-94 SOUL heme-binding family protein (.1) Lus10017193 [exp] 229 / 2e-77 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1) Lus10035541 [exp] 194 / 1e-64 AT2G37970 131 / 2e-39 SOUL heme-binding family protein (.1) Lus10000227 [exp] 176 / 2e-56 AT2G37970 222 / 1e-73 SOUL heme-binding family protein (.1) Lus10022712 [exp] 65 / 1e-12 AT3G10130 366 / 1e-127 SOUL heme-binding family protein (.1) Lus10014203 [exp] 54 / 5e-09 AT3G10130 290 / 4e-98 SOUL heme-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G109400 [exp] 214 / 2e-71 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1) Potri.018G073501 [exp] 58 / 3e-10 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2) Potri.015G080000 [exp] 45 / 7e-06 AT1G17100 153 / 2e-46 SOUL heme-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF04832 [flax] [poplar] SOUL SOUL heme-binding protein
Representative CDS sequence Show only first row Show all	>Lus10000106 pacid=23175808 polypeptide=Lus10000106 locus=Lus10000106.g ID=Lus10000106.BGIv1.0 annot-version=v1.0 ATGGGTATGGTGCTAGGAAAGATCCCAGTCGAAACTCCAAAGTACGAACTGATCAAAGCCTGCAAGGACTACACGATCTGGAAATACGTTCCAGTGGTTG CGGCACAGATTACATACAGCCCGGCCGAGTTCAAGGGAGACAAAGATGGGGGCTTTACGGTTCTCGCCAAGTACATAGGCGTGTTTGAGACCCCACAGAA TGCCAAGCCGGAGGAGAAAATTGCAATGACTGCTCCTGTTATCTCGAAAACCGGCAAAAAGATTGCGATGACTGCTCCTGTGGTGACTAAAGAAGATGGT GGTGGTGGAGAGATGGTCACGATGGAATTCTTATTGCCGCCAAAGTACCAAAAGGCGGAGGAGGCTCCTAATCCGGTGGATGTGAGGGTTGTCATAAGGG AAGTGGGTGAGAAGAAGTATGGAGTGGTGAAGTTTTCTGGTGTGGCGAGTGATGGTGTTGTGGCAATGAAGATGGAGAAGCTGATGGAGAGGTTGGTGGA AGATGGGTATAAGATATTTGTTGGCTAG
AA sequence Show only first row Show all	>Lus10000106 pacid=23175808 polypeptide=Lus10000106 locus=Lus10000106.g ID=Lus10000106.BGIv1.0 annot-version=v1.0 MGMVLGKIPVETPKYELIKACKDYTIWKYVPVVAAQITYSPAEFKGDKDGGFTVLAKYIGVFETPQNAKPEEKIAMTAPVISKTGKKIAMTAPVVTKEDG GGGEMVTMEFLLPPKYQKAEEAPNPVDVRVVIREVGEKKYGVVKFSGVASDGVVAMKMEKLMERLVEDGYKIFVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10000106 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10013729 [exp]	4.9	0.8563
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035742 [exp]	5.7	0.8839
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10025743 [exp]	6.1	0.8921
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10024636 [exp]	6.5	0.8459
AT5G12320			ankyrin repeat family protein ...		Lus10009696 [exp]	8.8	0.8748
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10043228 [exp]	10.1	0.8871
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10032634 [exp]	13.0	0.8790
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Lus10004784 [exp]	13.1	0.8671
AT5G59460			scarecrow-like transcription f...		Lus10001576 [exp]	16.7	0.8500
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10033637 [exp]	17.5	0.8488

Compare expression of checked genes

Lus10000106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.