Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60780 573 / 0 HAP13 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) AT1G10730 560 / 0 Clathrin adaptor complexes medium subunit family protein (.1) AT5G46630 256 / 4e-82 Clathrin adaptor complexes medium subunit family protein (.1.2) AT4G24550 177 / 2e-52 Clathrin adaptor complexes medium subunit family protein (.1.2.3) AT1G56590 135 / 5e-36 ZIP4 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) AT4G35410 41 / 0.0004 Clathrin adaptor complex small chain family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042083 [exp] 640 / 0 AT1G60780 779 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10004626 [exp] 567 / 0 AT1G60780 827 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10026688 [exp] 556 / 0 AT1G60780 813 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10018088 [exp] 466 / 2e-159 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10040086 [exp] 235 / 7e-74 AT5G46630 853 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10030961 [exp] 218 / 2e-67 AT5G46630 837 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10024548 [exp] 172 / 1e-49 AT4G24550 804 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10003537 [exp] 164 / 2e-46 AT4G24550 785 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10031432 [exp] 142 / 1e-38 AT1G56590 705 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044700 [exp] 570 / 0 AT1G60780 834 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.008G187600 [exp] 569 / 0 AT1G60780 831 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.003G090800 [exp] 248 / 8e-79 AT5G46630 831 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.001G143800 [exp] 247 / 2e-78 AT5G46630 816 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.002G105100 [exp] 177 / 1e-51 AT4G24550 817 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.005G010600 [exp] 143 / 5e-39 AT1G56590 716 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.013G006400 [exp] 139 / 8e-38 AT1G56590 712 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.012G052000 [exp] 42 / 0.0002 AT2G17380 307 / 6e-109 associated protein 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF01217 [flax] [poplar] Clat_adaptor_s Clathrin adaptor complex small chain CL0448 [flax] [poplar] Cargo_bd_muHD PF00928 [flax] [poplar] Adap_comp_sub Adaptor complexes medium subunit family
Representative CDS sequence Show only first row Show all	>Lus10000107 pacid=23155587 polypeptide=Lus10000107 locus=Lus10000107.g ID=Lus10000107.BGIv1.0 annot-version=v1.0 ATGGCAGGCGCCGCCTCGGCGCTCTTCCTTCTTGACATCAAAGGCCGTATCCTCATTTGGCGAGACTACCGCGGCCACGTCACCGCCTCCCAGGCTGAGC GCTTCTTCTCCAAGCTCCTCGACAAACAGGCTGACCTACAGTCTCAGGATCCTGTGGTTTACGAGGATGGAATTACTTACATGTTCATACAGCACAATAA CATTTACTTGCTCGTCGCCTCCAAACAGAACTGCAACGCTGCCAGCCTTCTACTCTTCCTTCATCGCGTAGTTCAAGTTTTCAAGCATTACTTTGAGGAG TTAGAGGAGGAATCTCTCAGAGACAATTTTGTCGTTGTGTATGAGTTACTTGATGAAATCATGGACTTTGGGTTCCCACAATTTACTGAGGCGAAGATTC TGAGCGAGTTCATCAAGACTGATGCATACAGGTTGGAAGTTGCACAGAGGCCACCTATGGCTGTCACTAACGCTGTTTCCTGGCGTAGTGAAGGGATAAA GTACAAAAAGAACGAAGTGTTCCTTGATGTAGTGGAAAGTGTGAATATTCTTGTTAACAGCAATGGGCAAATAATCCGGTCGGATGTCGTTGGGGCGTTA AAGATGAGAACATACTTGAGGTGCATCATTGCTTCTGAATCTTTGGACTTTGTCTTCAATTCAAGCTGTGGCATGCCTGAGTGCAAGCTTGGCCTAAATG ACAGATTGCTTATGGAGTCTCAAGGTCGAGCAACCAAAGCAAAAGCCATTGATCTTGATGATATCAAATTCCATCAATGTGTTCGTTTGGCTCGATTCGA TAACGATAGGACGATATCCTTCATACCTCCAGATGGCTCTTTTGATCTAATGACGTATAGGCTCGCCACCCAGGCCTTGAATTGGTGCAGCACTGCAACG AACGTTGAGATTGTATTGCCAGTTCCATCTGATGCTACGAATCCCAACGTCAGGACATCGATGGGTTCTGCTTTGTACGCTCCGGAGAACGATGCACTCG TCTGGAAGATCAGCTCATTCCCTGGCAGTAAGGTATAG
AA sequence Show only first row Show all	>Lus10000107 pacid=23155587 polypeptide=Lus10000107 locus=Lus10000107.g ID=Lus10000107.BGIv1.0 annot-version=v1.0 MAGAASALFLLDIKGRILIWRDYRGHVTASQAERFFSKLLDKQADLQSQDPVVYEDGITYMFIQHNNIYLLVASKQNCNAASLLLFLHRVVQVFKHYFEE LEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRLEVAQRPPMAVTNAVSWRSEGIKYKKNEVFLDVVESVNILVNSNGQIIRSDVVGAL KMRTYLRCIIASESLDFVFNSSCGMPECKLGLNDRLLMESQGRATKAKAIDLDDIKFHQCVRLARFDNDRTISFIPPDGSFDLMTYRLATQALNWCSTAT NVEIVLPVPSDATNPNVRTSMGSALYAPENDALVWKISSFPGSKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10000107 [exp]	0	1
AT1G63060			unknown protein		Lus10000001 [exp]	10.3
AT5G26150			protein kinase family protein ...		Lus10000068 [exp]	84.9
AT5G35110			unknown protein		Lus10000078 [exp]	90.9
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Lus10000082 [exp]	93.2
AT2G46490			unknown protein		Lus10000088 [exp]	96.6
AT4G09160			SEC14 cytosolic factor family ...		Lus10000102 [exp]	104.0
					Lus10000109 [exp]	107.5
AT3G07565			Protein of unknown function (D...		Lus10000123 [exp]	114.3
					Lus10000134 [exp]	119.3
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10000140 [exp]	122.0

Compare expression of checked genes

Lus10000107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.