Plant FIBer expression Database

Lus10000108 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16630 57 / 7e-10 ATRAD4 DNA repair protein Rad4 family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004055
[exp]
267 / 3e-84 AT5G16630 771 / 0.0 DNA repair protein Rad4 family (.1.2)
Lus10002285
[exp]
256 / 8e-81 AT5G16630 668 / 0.0 DNA repair protein Rad4 family (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G087400
[exp]
99 / 3e-24 AT5G16630 786 / 0.0 DNA repair protein Rad4 family (.1.2)
PFAM info
Representative CDS sequence
>Lus10000108 pacid=23172393 polypeptide=Lus10000108 locus=Lus10000108.g ID=Lus10000108.BGIv1.0 annot-version=v1.0
ATGCGAACCAGGAGAACAGAGCATGACCATACTCCTCCTCCTTCTACGTCAGCAAAAGGAAGTGTTAGCGGTATTGCAGAAGGGCCGAATATTGCCGACA
TGTCGAGGAATGCAGTTGATAAAGTTGTAAGACGGGTGACAACTCGTAGCTCATTGCGGGAAAGGAAAGAGCTAGATAACAGGTCAAAAAGTAAAGAGAA
ACAAGGTGTTGATGCAAAGGCTACATGGAACGAGGTGGATGCACAACGTTCTGAAAAGTTACGCAAGGAAAGGAATCAGAGGGAGGTGGGTGCCTCTAGT
TGCCCTATTCAAGGGAGTGAGAATGAGATGGATGACATTGACTGGGAAGATGGTTCTATGTCGGTGATGGATCCTGTAAAAAATAGTTCTAATCAAGGTG
ATGATAACCGAATGCTGACTATTGAGTTTGACACAGTACCTGATTCTTCCAAGCGGAAGCCCTCTCGTCGAGCTACTGCTGAAGAGAAGGTAACGTGTGT
TTCTTCAGTATACCTAGATGTTGGTCTCATTGTTACCGATTAA
AA sequence
>Lus10000108 pacid=23172393 polypeptide=Lus10000108 locus=Lus10000108.g ID=Lus10000108.BGIv1.0 annot-version=v1.0
MRTRRTEHDHTPPPSTSAKGSVSGIAEGPNIADMSRNAVDKVVRRVTTRSSLRERKELDNRSKSKEKQGVDAKATWNEVDAQRSEKLRKERNQREVGASS
CPIQGSENEMDDIDWEDGSMSVMDPVKNSSNQGDDNRMLTIEFDTVPDSSKRKPSRRATAEEKVTCVSSVYLDVGLIVTD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G16630 ATRAD4 DNA repair protein Rad4 family... Lus10000108
[exp]
0 1
AT1G58060 RNA helicase family protein (.... Lus10020816
[exp]
3.2 0.9308
AT2G41520 TPR15 tetratricopeptide repeat 15, H... Lus10031042
[exp]
4.5 0.9158
AT4G01860 Transducin family protein / WD... Lus10009986
[exp]
4.6 0.9063
AT4G01860 Transducin family protein / WD... Lus10038045
[exp]
11.0 0.8774
AT2G41520 TPR15 tetratricopeptide repeat 15, H... Lus10035427
[exp]
23.6 0.8667
AT4G02560 HD LD luminidependens, Homeodomain-l... Lus10009816
[exp]
25.6 0.8836
AT3G05680 EMB2016 embryo defective 2016 (.1.2) Lus10013587
[exp]
26.6 0.8866
AT4G32700 TEB TEBICHI, helicases;ATP-depende... Lus10022115
[exp]
27.1 0.8796
AT4G17330 ATG2484-1 G2484-1 protein (.1) Lus10004730
[exp]
29.1 0.8788
AT1G52640 Pentatricopeptide repeat (PPR)... Lus10030603
[exp]
30.4 0.8382

Lus10000108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.