Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37380 412 / 3e-141 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 328 / 3e-108 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 318 / 1e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 320 / 4e-104 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 320 / 8e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 318 / 2e-103 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 308 / 1e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G01510 308 / 2e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 313 / 4e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 310 / 4e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010385 [exp] 631 / 0 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 592 / 0 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 333 / 2e-109 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016387 [exp] 322 / 1e-107 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 328 / 3e-107 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 327 / 5e-107 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 321 / 2e-105 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 318 / 2e-104 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 319 / 3e-103 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050200 [exp] 491 / 2e-172 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G239600 [exp] 369 / 2e-124 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 345 / 4e-113 AT3G22690 582 / 0.0 unknown protein Potri.018G040100 [exp] 338 / 3e-111 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 333 / 1e-110 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 334 / 2e-110 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 332 / 4e-110 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 328 / 3e-107 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G220300 [exp] 324 / 6e-106 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 324 / 7e-106 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000110 pacid=23154296 polypeptide=Lus10000110 locus=Lus10000110.g ID=Lus10000110.BGIv1.0 annot-version=v1.0 ATGATTGTTGGATATTCGATTCACGGGTTTAGTAAGGATGCATTGCATTTGTTTGATGAGATGTGCAGGCTAGGGTACAAACCAACCTATATAACTTTCA TTGGCGTGCTGAATGCTTGCACTCATGCCGGTTTGGTTCGCGAAGGACGGGAAGTTTTCTATTCCATGGCAGAAAAATACGGTATTGAGCCAAGGATCGA GCATTACGGGTGCATGGTAAACCTCCTTGGTCGTGCCGGCCATCTAGAAGAAGCTTACGAGCTCGTCAAGAACATGGAAATAGAACAAGACGTTATCTTA TGGGGAGCTCTGTTGGGTGCTTGTAGAATTCACGGTAATGTTGCTTTAGGCGAGGAGATTGCCCGTTTTATGATCAACCAGAATCTTGCGAATCCTGGTA CATATGTGCTTATGTCCAACATGTACGCCGAGGCAAACGACTGGGAAGGATTAGCCGGGGTGAGGAAATTGATGAGAGAAAAAGGAGTAGAGAAAGAGCA TGGTTGCAGCTCGATAGAAGTGAAGAATAAAGTGCACGAGTTCGTTGCTGGGGACTGGAGGCATCCGAAGAGCAGAGACATTCATAATATGGTAGAAGAA ATGAATAAATGGGCTAAAGCTCATGGGCATAACCCTAGAATGGACACTGTATTGCACGATTTAGAGGAAGCAGAGAAGGGGCAGTCACTCGGAGCTCACA GTGAAAGACTCGCTACAGCCTTTGGGCTGATCAGTACTAAACCTGGGACTACAATACGGATTGTGAAGAACCTGAGGGTATGTCGAGATTGCCACACTGT TACAAAGTTGATCTCTAAGATAACTGGACGAAAGATTGTTATGAGAGATCGTAATCGTTTCCACCATTTTCAGGATGGGTCATGTTCTTGCAGGGATTAC TGGTAA
AA sequence Show only first row Show all	>Lus10000110 pacid=23154296 polypeptide=Lus10000110 locus=Lus10000110.g ID=Lus10000110.BGIv1.0 annot-version=v1.0 MIVGYSIHGFSKDALHLFDEMCRLGYKPTYITFIGVLNACTHAGLVREGREVFYSMAEKYGIEPRIEHYGCMVNLLGRAGHLEEAYELVKNMEIEQDVIL WGALLGACRIHGNVALGEEIARFMINQNLANPGTYVLMSNMYAEANDWEGLAGVRKLMREKGVEKEHGCSSIEVKNKVHEFVAGDWRHPKSRDIHNMVEE MNKWAKAHGHNPRMDTVLHDLEEAEKGQSLGAHSERLATAFGLISTKPGTTIRIVKNLRVCRDCHTVTKLISKITGRKIVMRDRNRFHHFQDGSCSCRDY W

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10000110 [exp]	0	1
AT2G31890		ATRAP	RAP (.1)		Lus10033769 [exp]	3.2	0.9293
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10015302 [exp]	3.7	0.9381
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10000063 [exp]	4.2	0.9187
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10002315 [exp]	4.7	0.9339
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10019493 [exp]	5.2	0.9304
AT3G61870			unknown protein		Lus10012617 [exp]	7.7	0.9293
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10036471 [exp]	7.7	0.9095
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10043342 [exp]	8.1	0.9267
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	12.0	0.9214
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000035 [exp]	14.7	0.9003

Compare expression of checked genes

Lus10000110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.