Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09890 330 / 3e-109 Rhamnogalacturonate lyase family protein (.1) AT1G09910 322 / 1e-105 Rhamnogalacturonate lyase family protein (.1) AT4G24430 315 / 2e-103 Rhamnogalacturonate lyase family protein (.1) AT1G09880 301 / 7e-98 Rhamnogalacturonate lyase family protein (.1) AT2G22620 274 / 3e-87 Rhamnogalacturonate lyase family protein (.1.2) AT4G38030 271 / 5e-86 Rhamnogalacturonate lyase family protein (.1) AT4G37950 245 / 3e-76 Rhamnogalacturonate lyase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000129 [exp] 465 / 2e-167 AT1G09890 350 / 2e-117 Rhamnogalacturonate lyase family protein (.1) Lus10030233 [exp] 467 / 8e-163 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10028212 [exp] 337 / 1e-111 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10000684 [exp] 327 / 2e-107 AT1G09910 842 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10005979 [exp] 304 / 2e-98 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10039627 [exp] 280 / 8e-90 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10029552 [exp] 276 / 2e-89 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10004281 [exp] 259 / 3e-81 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10019231 [exp] 259 / 6e-81 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110200 [exp] 378 / 7e-128 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 360 / 6e-121 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110000 [exp] 349 / 2e-116 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.005G151500 [exp] 337 / 3e-111 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110100 [exp] 308 / 4e-100 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.006G218500 [exp] 285 / 2e-91 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.014G004500 [exp] 281 / 5e-90 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.011G006200 [exp] 263 / 4e-83 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF06045 [flax] [poplar] Rhamnogal_lyase Rhamnogalacturonate lyase family
Representative CDS sequence Show only first row Show all	>Lus10000111 pacid=23179025 polypeptide=Lus10000111 locus=Lus10000111.g ID=Lus10000111.BGIv1.0 annot-version=v1.0 ATGGTCTTGGTACTGGAATTGACAGCGTTTGAGCGAAAAACGAAGCGTAATGGTTTTGCATATTTTGTAGATATTGGGACCTTGTCTGGAGTAAAGAAGG GAGCACAGGAACAAAAGGAACTCAGGAAAGAATTCAGTGTGATGGTGGAAAATGAGGAACAAGTGGAAGTCTCATTTGCAAGAACATGGGATCCTTCCCT TGAAGGCCAGCTTCCTTCTCTTAACATAGACAAGAGGTTCATATTGCTTCGAAACTCGTCGGGATTCTACTCGTACGCGATTTTCGAGCATTTGCCTGAA TGGACCCCTTTCCACCTCCCACAAGTCAGGATTGTGTTCAAGCTCAATAAAGACAAGTTCCATTACATGGCTGTGGGAGATACCAGACAGAGATTCATGC CATTACCTGATGATAGGCTTCCAGAGAGATGCAAAGAACTTGCTTATCCTGAAGCTGTGCTACTTGTCAACCCTGTTGAACCAGAATTTCAAGGAGAGGT GGATGACAAGTACCAGTATTCTTGCGAAAACAAGGATTTGAAAGTGCATGGATGGATAAGCTCGGATCCAGCAGTAGGATTCTGGCAGATCACACCTAGC AATGAGTTCAGATCAGGTGGACTGGTGAAACAGAACCTCACATCTCATTGTGGTCCGATCAACCTCGCTATGTTTCTGAGTGCTCACTATGCTGGTGATG ATATGGTCCTGAAACTCAAACCAGGGGAGCCCTGGAAGAAAGTCCTTGGTCCTGTCTTTATGTATCTCAACACTGTCGCTGACGACGGAGGAAACATCAA CTCGTTACTTTCCTCTTTATGGGAAGATGCCAAGCAACAGGTGACTGATCATTCTGATCGATCAAACTTGGTAACATTTGCAAATTGCAAAATGTGA
AA sequence Show only first row Show all	>Lus10000111 pacid=23179025 polypeptide=Lus10000111 locus=Lus10000111.g ID=Lus10000111.BGIv1.0 annot-version=v1.0 MVLVLELTAFERKTKRNGFAYFVDIGTLSGVKKGAQEQKELRKEFSVMVENEEQVEVSFARTWDPSLEGQLPSLNIDKRFILLRNSSGFYSYAIFEHLPE WTPFHLPQVRIVFKLNKDKFHYMAVGDTRQRFMPLPDDRLPERCKELAYPEAVLLVNPVEPEFQGEVDDKYQYSCENKDLKVHGWISSDPAVGFWQITPS NEFRSGGLVKQNLTSHCGPINLAMFLSAHYAGDDMVLKLKPGEPWKKVLGPVFMYLNTVADDGGNINSLLSSLWEDAKQQVTDHSDRSNLVTFANCKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10000111 [exp]	0	1
AT4G24430			Rhamnogalacturonate lyase fami...		Lus10030233 [exp]	1.0	0.9277
AT2G44500			O-fucosyltransferase family pr...		Lus10037475 [exp]	6.8	0.8097
AT3G07510			unknown protein		Lus10025856 [exp]	7.7	0.7971
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10021238 [exp]	8.1	0.8572
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10023645 [exp]	12.6	0.8687
					Lus10028069 [exp]	12.7	0.8790
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029981 [exp]	13.7	0.8789
					Lus10034979 [exp]	14.4	0.8757
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10005649 [exp]	15.3	0.8134
AT3G19680			Protein of unknown function (D...		Lus10012451 [exp]	22.4	0.7953

Compare expression of checked genes

Lus10000111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.