Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45380 129 / 6e-36 ATDUR3 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003564 [exp] 176 / 6e-54 AT5G45380 778 / 0.0 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1) Lus10037255 [exp] 151 / 8e-44 AT5G45380 1095 / 0.0 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G104000 [exp] 145 / 5e-42 AT5G45380 1028 / 0.0 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000112 pacid=23177075 polypeptide=Lus10000112 locus=Lus10000112.g ID=Lus10000112.BGIv1.0 annot-version=v1.0 ATGGCGTCAACTCAGTCAAAGTGTCCGCCTTTCGACTTCTCTGCTAAATACTACTACACCAATGGCGGAGGGTGCATTCGGCAGAACAGCTTCTTTGACG GGAAACCAATACTAAGTCAAGGAGTAGGCTACTCTCTCATCCTCGGCTTCGGCGCCTTCTTCGCTCTCTTCACTTCTTTTCTGGTGTGGGTGGAGAAAAG ATACATAGGGTCCCGGCACACTTCAGAATGGTTCAACAGCGCCGGCCGAAACGTCAAAACTGGCCTCATTGCCTGTGTTATTGTCTCCCAGCTTACTCTT AGATATACTTACCCTTTCTACAACTGTTGA
AA sequence Show only first row Show all	>Lus10000112 pacid=23177075 polypeptide=Lus10000112 locus=Lus10000112.g ID=Lus10000112.BGIv1.0 annot-version=v1.0 MASTQSKCPPFDFSAKYYYTNGGGCIRQNSFFDGKPILSQGVGYSLILGFGAFFALFTSFLVWVEKRYIGSRHTSEWFNSAGRNVKTGLIACVIVSQLTL RYTYPFYNC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10000112 [exp]	0	1
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10003565 [exp]	2.0	0.7990
AT5G59845			Gibberellin-regulated family p...		Lus10001407 [exp]	3.2	0.7571
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10033906 [exp]	4.6	0.7444
AT4G08910			unknown protein		Lus10025524 [exp]	5.8	0.7919
AT3G09180			unknown protein		Lus10016953 [exp]	6.9	0.7776
					Lus10042511 [exp]	10.2	0.7699
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10020381 [exp]	17.7	0.7320
					Lus10035120 [exp]	18.5	0.7436
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10034573 [exp]	20.5	0.7404
AT2G36110			Polynucleotidyl transferase, r...		Lus10043049 [exp]	22.0	0.7514

Compare expression of checked genes

Lus10000112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.