Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24510 647 / 0 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G18190 180 / 4e-52 TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 164 / 2e-46 TCP-1/cpn60 chaperonin family protein (.1) AT5G26360 164 / 5e-46 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 155 / 1e-42 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G20050 152 / 9e-42 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT5G16070 143 / 2e-38 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 138 / 1e-36 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 105 / 4e-25 TCP-1/cpn60 chaperonin family protein (.1) AT3G14270 54 / 9e-08 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036947 [exp] 686 / 0 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006457 [exp] 672 / 0 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10011401 [exp] 672 / 0 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006240 [exp] 579 / 0 AT1G24510 816 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10008670 [exp] 177 / 3e-51 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 172 / 4e-49 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10014511 [exp] 171 / 5e-49 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10032176 [exp] 171 / 8e-49 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10028007 [exp] 168 / 5e-48 AT5G20890 752 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G182300 [exp] 642 / 0 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.010G051700 [exp] 642 / 0 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.012G051300 [exp] 192 / 1e-56 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 184 / 1e-53 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G195300 [exp] 167 / 4e-47 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.T046300 [exp] 166 / 1e-46 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.001G341100 [exp] 165 / 2e-46 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 164 / 4e-46 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.006G128600 [exp] 162 / 1e-45 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 162 / 3e-45 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10000113 pacid=23148935 polypeptide=Lus10000113 locus=Lus10000113.g ID=Lus10000113.BGIv1.0 annot-version=v1.0 ATGGACAAGATGCTCTCTAGTCCCGACGGCGACGTCACTATCACGAATGATGGTGCTACCATCTTGGAGCAGATGGACGTGGACAACCAAATTGCGAAGC TGATGGTTGAGCTATCCAGGAGTCAGGATTACGAAATTGGCGATGGTACGACTGGTGTTGTGGTAATGGCTGGGAGCCTTCTAGAGCAGGCTGAGAAGTT GATAGAGCGGGGAATTCATCCAATTAGGATTGCAGAGGGCTACGAGATGGCGTCTAGAATAGTTGTTGAACATATGGAGCGTATTGCTCACAAGTTCGAA TTTGAAGAGAAGAACATTGAGCCCCTGGTTCAAACATGCATGACTACCTTATCTTCGAAGATTGTGAATCGATGCAAGCGTAGTCTGGCTGAAATTGCAG TCAAAGCTGTTCTCGCTGTTGCAGATCTAGAGAGGAAGGATGTTAATTTGGACTTGATTAAGGTTGATGGCAAGGTGGGTGGTAAGTTGGAAGATACCGA ACTGATATACGGAATAGTCGTCGACAAGGACATGAGTCACCCACAGATGCCTAAGCAAATTCAAGACGCAAACATAGCTATCCTGACATGCCCCTTTGAA CCTCCGAAGCCAAAGACCAAGCATAAGGTGGACATTGACACAGTAGAGAAGTTTGAGACTCTTCGTAGGCAGGAGCAGCAGTATTTTGATGATATGGTTC AGAAATGCAAGGATGTTGGTGCCACCCTGGTTATCTGCCAGTGGGGATTCGACGACGAGGCAAACCATTTGTTAATGCACAGAAACCTGCCTGCAGTGCG TTGGGTCGGTGGAGTAGAGCTAGAGCTGATAGCTATCGCCACAGGTGGCAGAATTGTTCCAAGGTTCCAAGAACTGACACCAGAGAAGCTAGGAAAGGCT GGTTTGGTCAAGGAAAAGGCCTTTGGTACCACAAAAGACCGAATGCTCTACATTGAACATTGTGCCAATTCAAGAGCTGTCACCATATTTATCCGTGGAG GTCAGCATATTTATTAG
AA sequence Show only first row Show all	>Lus10000113 pacid=23148935 polypeptide=Lus10000113 locus=Lus10000113.g ID=Lus10000113.BGIv1.0 annot-version=v1.0 MDKMLSSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLIERGIHPIRIAEGYEMASRIVVEHMERIAHKFE FEEKNIEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERKDVNLDLIKVDGKVGGKLEDTELIYGIVVDKDMSHPQMPKQIQDANIAILTCPFE PPKPKTKHKVDIDTVEKFETLRRQEQQYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKA GLVKEKAFGTTKDRMLYIEHCANSRAVTIFIRGGQHIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10000113 [exp]	0	1
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Lus10032447 [exp]	1.7	0.8568
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Lus10042947 [exp]	3.2	0.8814
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011770 [exp]	4.9	0.8563
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Lus10006374 [exp]	5.3	0.8582
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10001959 [exp]	7.3	0.8417
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10006769 [exp]	8.1	0.8181
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10016943 [exp]	10.5	0.8266
AT3G58610			ketol-acid reductoisomerase (....		Lus10011918 [exp]	13.4	0.8285
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Lus10018387 [exp]	17.6	0.8462
AT5G60670			Ribosomal protein L11 family p...		Lus10019935 [exp]	19.9	0.8210

Compare expression of checked genes

Lus10000113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.