Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51620 100 / 1e-24 PAP/OAS1 substrate-binding domain superfamily (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014166 [exp] 352 / 1e-119 AT3G51620 539 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10022746 [exp] 325 / 3e-108 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006094 [exp] 155 / 1e-44 AT3G51620 259 / 6e-77 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 155 / 9e-44 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 151 / 3e-42 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G128800 [exp] 42 / 0.0001 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000115 pacid=23159412 polypeptide=Lus10000115 locus=Lus10000115.g ID=Lus10000115.BGIv1.0 annot-version=v1.0 ATGTTGTCCCCTGTTGGATCATCAGTTGGATTTCCTTCTGAAAATCATCGACCTGGTCACTGTAGTGCTGGAAACTTCGATGCCCTCGACTCTTTGTCAG ATCTAAGCGGTGATTATGAAGCTCACCTCCTTAGTTTGAGCCATGGCCGGTGGTGCTACGAATACATACCAACTTCTCCAGTTCCGCCTATATCTCCCGT AATGTTCAGTCCGGTCCAGAACAAAAATTATTGGGACGGAACGAGACGACCGGCTCATTACAGGCAGAATCTCAATGGAGTGAGTCCGAGGCCCGTGCTC AATTCGATCAATCCACCCTTTCTGCACGGTCCAATGTTTGCTATAGAAGAGGGATCGAAGCAACGAGGAACCGGGACATACTTCCCAAAAGTGAACCATT ACAGGGACAAGTCTTTGACGCTAAGGGGAAGTAGTCAGGTGTCACTACGTCCTCCTTGTACCAATGGCCGTATCGCTACTTCTCAGGAGCCTAACTTTTC AGAAAGAAGCAGAGGGCAGCTATGTCCAGATTCTGCTGTTGGACCGGATACACTGCAGTCAAAACCTCCAGCCATTGAAAGGTAG
AA sequence Show only first row Show all	>Lus10000115 pacid=23159412 polypeptide=Lus10000115 locus=Lus10000115.g ID=Lus10000115.BGIv1.0 annot-version=v1.0 MLSPVGSSVGFPSENHRPGHCSAGNFDALDSLSDLSGDYEAHLLSLSHGRWCYEYIPTSPVPPISPVMFSPVQNKNYWDGTRRPAHYRQNLNGVSPRPVL NSINPPFLHGPMFAIEEGSKQRGTGTYFPKVNHYRDKSLTLRGSSQVSLRPPCTNGRIATSQEPNFSERSRGQLCPDSAVGPDTLQSKPPAIER

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10000115 [exp]	0	1
AT1G27752			Ubiquitin system component Cue...		Lus10007753 [exp]	19.1	0.8732
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10015975 [exp]	25.1	0.8674
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10024411 [exp]	83.2	0.8476
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10031273 [exp]	84.0	0.8397
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10007803 [exp]	126.4	0.8213
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10034470 [exp]	136.9	0.8242
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10024043 [exp]	142.7	0.8348
AT5G14970			unknown protein		Lus10032180 [exp]	153.4	0.8413
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10021111 [exp]	163.3	0.8226
AT2G01080			Late embryogenesis abundant (L...		Lus10005728 [exp]	205.2	0.8250

Compare expression of checked genes

Lus10000115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.