Plant FIBer expression Database

Lus10000116 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16940 221 / 9e-76 carbon-sulfur lyases (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018517
[exp]
291 / 3e-103 AT5G16940 221 / 1e-75 carbon-sulfur lyases (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G131900
[exp]
236 / 1e-81 AT5G16940 222 / 4e-76 carbon-sulfur lyases (.1.2)
Potri.017G132500
[exp]
218 / 2e-74 AT5G16940 208 / 1e-70 carbon-sulfur lyases (.1.2)
Potri.017G132000
[exp]
204 / 3e-69 AT5G16940 198 / 1e-66 carbon-sulfur lyases (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0080 Beta-tent PF04828 GFA Glutathione-dependent formaldehyde-activating enzyme
Representative CDS sequence
>Lus10000116 pacid=23158683 polypeptide=Lus10000116 locus=Lus10000116.g ID=Lus10000116.BGIv1.0 annot-version=v1.0
ATGGAGGATGAAGAATTGGTGATTCACAGCGGTGGATGCCATTGTGGGAAGATAAGATGGCGAGTTCAAGCACCACGGAGCGTGGTAGCTTGGAAATGCA
ACTGTTCGGATTGTTCCATGAGAGGGAATGTTCATTTCATTGTTCCTTCCCACAGTTTCGAGCTTCTGGGTGATTCTCAAAGTTACGTTACCACCTATAC
CTTTGGCACTCACACTGCGAAACACACCTTCTGCAAAGTCCGTGGGATCACTTCGTACTACATTCCAAGATCGAATCCGGATGGTGTTGCGGTTACTTTC
AGGTGCGTGGATCCTGGAACTCTTACACATATCGAGATCAAGGATTTTGATGGCAAGAATTGGGATAGCTCCTATTCTCAGACCGGCATTGCCTCGTGCT
CCAAGGATCGAACTTCTTAA
AA sequence
>Lus10000116 pacid=23158683 polypeptide=Lus10000116 locus=Lus10000116.g ID=Lus10000116.BGIv1.0 annot-version=v1.0
MEDEELVIHSGGCHCGKIRWRVQAPRSVVAWKCNCSDCSMRGNVHFIVPSHSFELLGDSQSYVTTYTFGTHTAKHTFCKVRGITSYYIPRSNPDGVAVTF
RCVDPGTLTHIEIKDFDGKNWDSSYSQTGIASCSKDRTS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G16940 carbon-sulfur lyases (.1.2) Lus10000116
[exp]
0 1
AT5G16940 carbon-sulfur lyases (.1.2) Lus10018517
[exp]
1.0 0.9754
AT4G35640 ATSERAT3;2 serine acetyltransferase 3;2 (... Lus10007424
[exp]
9.5 0.6954
AT4G36210 Protein of unknown function (D... Lus10041814
[exp]
9.9 0.6595
AT2G28880 ADCS, EMB1997 embryo defective 1997, aminode... Lus10036525
[exp]
14.7 0.7242
Lus10035197
[exp]
15.0 0.6840
AT4G37460 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetr... Lus10014863
[exp]
16.2 0.7331
AT1G10760 GWD1, GWD, SOP1... STARCH EXCESS 1, Pyruvate phos... Lus10013044
[exp]
22.8 0.7519
AT1G47270 TUB AtTLP6 tubby like protein 6 (.1.2) Lus10010833
[exp]
25.0 0.6874
AT3G22470 Pentatricopeptide repeat (PPR)... Lus10003426
[exp]
35.7 0.6815
AT1G25240 ENTH/VHS/GAT family protein (.... Lus10019132
[exp]
40.4 0.6494

Lus10000116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.