Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21065 392 / 2e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G48910 376 / 2e-125 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 369 / 1e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 364 / 3e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 365 / 2e-120 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 357 / 2e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 354 / 2e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 355 / 1e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 348 / 2e-113 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 348 / 4e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039388 [exp] 764 / 0 AT5G43790 506 / 8e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006628 [exp] 706 / 0 AT4G21065 399 / 7e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10010909 [exp] 385 / 4e-129 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 385 / 7e-129 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 384 / 9e-129 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 369 / 1e-121 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 364 / 5e-121 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 363 / 7e-121 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 365 / 3e-120 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065500 [exp] 400 / 3e-135 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 400 / 5e-134 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G001000 [exp] 388 / 2e-130 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G252400 [exp] 381 / 1e-129 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G012600 [exp] 384 / 2e-128 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 381 / 3e-127 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 380 / 2e-126 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 372 / 2e-123 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 368 / 1e-122 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 372 / 2e-122 AT3G22690 582 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000117 pacid=23168917 polypeptide=Lus10000117 locus=Lus10000117.g ID=Lus10000117.BGIv1.0 annot-version=v1.0 ATGCTGAAGAATTCTTCTGTTAGGCCGAATGAAGTTACGCTTGTGGCTGTGATTAGTGCTTGTTCTAATTTGGGTGCTCTCAGTCAAGGTGCTTGGGCAC ATTTGCTTGTGCTGAAGACCGGTCTCAAGCTAAATCGTTTTGTGGGCACTGCTTTAGTGGAATTGTATTCTAAAAGTGGGCGAGTGGATCTTGCACGCCA GGTGTTTGATCAATTGCCTCATAGGGATATACTTTGCTACAATGCGATGATTGGTGGCTTGGCAATTCATGGTTATGGCTTGCAGGCTCTTTGCTTATAC GAGAAAATGGAGCTTGAGTGCCTTACTCCTGATTCTGTGACGTTCATTGTTGCAATGAGTGCTTGCTCACATAGCGGGTTAGTAGAGCAGGGCCGTGAGA TTTTCGAGTCTATAGAAGAAGTTCATGGGATTGAACCAACAGTTGAGCACTATGGATGTGTAGTTGATCTTCTGATTCGTGCAGGCCGACTTAAAGAGGC TGAGGAAAAGGTTGGAACCATGCCAATGAAGCCTAATGCAGCTATATGGAGGTCACTACTAGGTGGAGCTAGGATTCATGGAGACTTACAGTTAGGTGAA ACGGCACTTAAACAGCTTGTGCAATTGGAGCCAGAGAAAAGTGGGAGTTACGTTCTTTTGTCAAACATGTATGCCTCCACCCACAAATGGGAAGAAGTGA AGAGAGTTAGAGAAGTCATGAAAGAGGAAGGGATCGTCAAATTTCCAGGCAGCTCCATGGTGGAGATCGGCGGAGCTATGCACGAGTTCATAAGTGGAGA CAGAACTCACCCACGTTCTAGTGACATCTACGCCAAGGTTGAGGAGATGAGCACCAAGTTGCAGGAACATGGCCACAGCCCAAGAACAAGGGAAGTATTG TTTGACATAGAGGATGAAGAGAAAGAAGATGCTCTTTCGTACCACAGCGAAAGGCTGGCGATTGCATTTGCTCTGTTGGTGGCTGCAGATTTGGACAACG TCCATGCTCCCGTACGAATAATAAAGAACCTTCGGGTTTGTGGGGATTGCCACGACAGTTTTAAGCTGATTTCTTTGATTTACAAGAGAGAAATTATAGT GAGGGATCGAAGTAGGTTTCATCATTTCAGAGATGGGAGATGTTCTTGTTTGGATTACTGGTAA
AA sequence Show only first row Show all	>Lus10000117 pacid=23168917 polypeptide=Lus10000117 locus=Lus10000117.g ID=Lus10000117.BGIv1.0 annot-version=v1.0 MLKNSSVRPNEVTLVAVISACSNLGALSQGAWAHLLVLKTGLKLNRFVGTALVELYSKSGRVDLARQVFDQLPHRDILCYNAMIGGLAIHGYGLQALCLY EKMELECLTPDSVTFIVAMSACSHSGLVEQGREIFESIEEVHGIEPTVEHYGCVVDLLIRAGRLKEAEEKVGTMPMKPNAAIWRSLLGGARIHGDLQLGE TALKQLVQLEPEKSGSYVLLSNMYASTHKWEEVKRVREVMKEEGIVKFPGSSMVEIGGAMHEFISGDRTHPRSSDIYAKVEEMSTKLQEHGHSPRTREVL FDIEDEEKEDALSYHSERLAIAFALLVAADLDNVHAPVRIIKNLRVCGDCHDSFKLISLIYKREIIVRDRSRFHHFRDGRCSCLDYW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10000117 [exp]	0	1
AT5G43790			Pentatricopeptide repeat (PPR)...		Lus10039388 [exp]	1.0	0.9623
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10021355 [exp]	3.2	0.9310
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027987 [exp]	6.0	0.8779
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10022844 [exp]	6.7	0.8973
AT5G25500			unknown protein		Lus10002897 [exp]	10.4	0.8859
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10018155 [exp]	17.9	0.8834
AT3G53630			unknown protein		Lus10023752 [exp]	18.3	0.8971
AT4G11010		NDPK3	nucleoside diphosphate kinase ...		Lus10032392 [exp]	20.2	0.8897
AT1G07130		STN1, ATSTN1	Nucleic acid-binding, OB-fold-...		Lus10042621 [exp]	23.6	0.8574
AT1G43580			Sphingomyelin synthetase famil...		Lus10028111 [exp]	24.1	0.8530

Compare expression of checked genes

Lus10000117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.