Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55060 319 / 1e-106 unknown protein AT5G58510 126 / 7e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043118 [exp] 484 / 3e-171 AT5G55060 630 / 0.0 unknown protein Lus10032631 [exp] 467 / 4e-164 AT5G55060 643 / 0.0 unknown protein Lus10040061 [exp] 390 / 1e-132 AT5G55060 753 / 0.0 unknown protein Lus10031287 [exp] 124 / 4e-32 AT5G58510 1122 / 0.0 unknown protein Lus10031857 [exp] 92 / 1e-21 AT5G58510 468 / 2e-158 unknown protein Lus10021546 [exp] 90 / 7e-21 AT5G55060 170 / 3e-48 unknown protein Lus10020371 [exp] 60 / 3e-10 AT4G26680 241 / 3e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G089300 [exp] 353 / 4e-118 AT5G55060 770 / 0.0 unknown protein Potri.009G076000 [exp] 105 / 8e-26 AT5G58510 1237 / 0.0 unknown protein Potri.001G280832 [exp] 52 / 4e-08 AT5G58510 164 / 3e-47 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000118 pacid=23175244 polypeptide=Lus10000118 locus=Lus10000118.g ID=Lus10000118.BGIv1.0 annot-version=v1.0 ATGATCGTAACCAGTTCAGCTAATGTATGTTTCCAATCACACTTGCAGCTGAGACGGCTCTGGTTCGAAGAACTCCATGTACCTGGCATTCCTCTGGATG AGCTTCCAGATCTTCATTCGTGCCTTCTATACCAGCAGTTGCAGGTTATCAACTGTTGTGTTTCGAGGAAAAAGCGCCATGCACTTGCTTCTGAATCACT GGAAGTTATATTAAAGGATGCGAGTGCAATCTCTGAAGAATCTTCTAAACGTGTAAATGCTCCCAGGCATTTATTATATGCCAGAACGAGTAGTGGAGAA CTTGTTCTTCGCCTAGGTGCAGATTCTAAGGCTCCTAACCTGCTCATGTTGGAAACTGGTGAACCAATATTCTCTCCTATCCCTCAGGAGCCGCCTTTGC TTACTGAAGATGTTATCAAAGAAAATGAAGAATTTATTCTCCGGACTGGGAGTGTTGGTGCAGGGTGTTCTCAGCTACTCTCTGACATGCAAGGTTTCAA GGCTGCGAATCCTGGATGCATATTAGAAGATTTTGTGAGATGGCATTCTCCTCCTGACTGGACAAGCAGTGAAGAAACTGACGAGGCTAATGAGTCTTCT TCAGCTAGGGACGCTTCACCTTCAACAAGAGGTTATCTAAGTAGCCGAATGCAGAAAGAAGGAAACTTGTGGCGTGAACTATGGGAAACATCTAAGCCAA TACCAGCGGTTAAACAAGCTCCCCTTTTCGATGAGGATTTGGCTGTGTAA
AA sequence Show only first row Show all	>Lus10000118 pacid=23175244 polypeptide=Lus10000118 locus=Lus10000118.g ID=Lus10000118.BGIv1.0 annot-version=v1.0 MIVTSSANVCFQSHLQLRRLWFEELHVPGIPLDELPDLHSCLLYQQLQVINCCVSRKKRHALASESLEVILKDASAISEESSKRVNAPRHLLYARTSSGE LVLRLGADSKAPNLLMLETGEPIFSPIPQEPPLLTEDVIKENEEFILRTGSVGAGCSQLLSDMQGFKAANPGCILEDFVRWHSPPDWTSSEETDEANESS SARDASPSTRGYLSSRMQKEGNLWRELWETSKPIPAVKQAPLFDEDLAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55060			unknown protein		Lus10000118 [exp]	0	1
AT5G61450			P-loop containing nucleoside t...		Lus10031740 [exp]	1.4	0.8474
AT4G18490			unknown protein		Lus10034597 [exp]	4.9	0.8102
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10041716 [exp]	6.3	0.7759
AT1G65070			DNA mismatch repair protein Mu...		Lus10018187 [exp]	9.2	0.7931
AT3G20720			unknown protein		Lus10011166 [exp]	11.4	0.8006
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Lus10019379 [exp]	11.8	0.7733
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10001011 [exp]	13.0	0.7766
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	14.4	0.7985
AT1G71240			Plant protein of unknown funct...		Lus10027905 [exp]	14.5	0.7796
AT4G11800			Calcineurin-like metallo-phosp...		Lus10021750 [exp]	15.5	0.7685

Compare expression of checked genes

Lus10000118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.