Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18750 149 / 4e-40 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20770 148 / 8e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 146 / 2e-39 MEF22 mitochondrial editing factor 22 (.1) AT2G33760 145 / 3e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55740 145 / 6e-39 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 143 / 3e-38 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16610 142 / 5e-38 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G03380 142 / 7e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G03540 140 / 2e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G27110 139 / 4e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033946 [exp] 388 / 7e-132 AT4G18750 410 / 1e-132 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 161 / 2e-44 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039703 [exp] 156 / 2e-43 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018492 [exp] 155 / 1e-42 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 154 / 1e-41 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009913 [exp] 152 / 4e-41 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033713 [exp] 148 / 2e-40 AT1G03540 726 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029436 [exp] 148 / 4e-40 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031989 [exp] 147 / 9e-40 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 160 / 5e-44 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 157 / 3e-43 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.006G155400 [exp] 149 / 1e-40 AT5G55740 706 / 0.0 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G161800 [exp] 149 / 3e-40 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G108000 [exp] 147 / 9e-40 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G043400 [exp] 144 / 5e-39 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G128800 [exp] 143 / 9e-39 AT4G25270 664 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 144 / 2e-38 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G244500 [exp] 144 / 2e-38 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 144 / 2e-38 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000119 pacid=23158809 polypeptide=Lus10000119 locus=Lus10000119.g ID=Lus10000119.BGIv1.0 annot-version=v1.0 ATGAGCTTATGGAGAATGACTAACAATGTTCAACACCACCCTTCTCTTTCCAAACTTACCCACTTGCTTCAGGTGTGCAGCGATTCCAATTATCTGAAAC AAGGCCAACAAATCCATCAACATGTCATTTTATCCGGGTCCGGTGATAACAAGTACATTGTGACTAAAGTGATTCAATTGTACGCAGATTGCGATGATCT GGGTTCGGCACGAAAGTTGTTCGATGTATTTCCACACCCAAATATGTTCGCTTGGACATCCATTCTTGGGTTCTTCTCGAGGCACGGGATGTATGAAGAA TGTGTGGAGAATTATGGGTTGACGAAGTTTCGAGGCGTCTCTGTGGATAACTATGTGTTCCCGAAAGTTCTAAAAGCGTGTGCTCAGTTGTCTTGGTTGG ATGGAGGGAGGTGGGTTAATTTAAGTGTAGTTTTTTCTGGCTGTGACCGGAATTCGCAAGTGTGCAATGCTTTGATCAACATGTATGCGAAATGTGGGGA TGTATCGAGTGGGAGGTTGGTGTTTGAGGAGATGGGGACGACGAGAGATTTATTGTCGTGGAATTCACTAATTTCAGGTTACGTTTCAAATCTCATGGAT ACATGTTTGAGAATTTTCAACGACATGGTGAATGAAGGGACAGTTTTTCCTGATGTAGATTCCCTTTCACTTGTCCTTGTTTCATGCCGCCATCTCTGTG CTTTGATGCATGGAAAGCCAATCCATGGTTATGGAATCAAAACTGGATCTGTGGGAAGATTTTATAGATCAGCTGGGCCGGCTTTGTTGACAATGTATGC TAAATGCGACTCGATTCATTACGCTAAAACTGTGTTTGCAGTACTGGAAAAATCCGACATTGTTGCCTGGAACGCAATGATCTCGCCTTTGCAGAACTGG AGTTGA
AA sequence Show only first row Show all	>Lus10000119 pacid=23158809 polypeptide=Lus10000119 locus=Lus10000119.g ID=Lus10000119.BGIv1.0 annot-version=v1.0 MSLWRMTNNVQHHPSLSKLTHLLQVCSDSNYLKQGQQIHQHVILSGSGDNKYIVTKVIQLYADCDDLGSARKLFDVFPHPNMFAWTSILGFFSRHGMYEE CVENYGLTKFRGVSVDNYVFPKVLKACAQLSWLDGGRWVNLSVVFSGCDRNSQVCNALINMYAKCGDVSSGRLVFEEMGTTRDLLSWNSLISGYVSNLMD TCLRIFNDMVNEGTVFPDVDSLSLVLVSCRHLCALMHGKPIHGYGIKTGSVGRFYRSAGPALLTMYAKCDSIHYAKTVFAVLEKSDIVAWNAMISPLQNW S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10000119 [exp]	0	1
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10026886 [exp]	10.2	0.6968
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10028237 [exp]	20.8	0.6763
					Lus10000429 [exp]	45.9	0.6370
					Lus10008178 [exp]	61.9	0.6346
AT2G36370			ubiquitin-protein ligases (.1)		Lus10035561 [exp]	70.3	0.6316
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10002760 [exp]	82.8	0.6313
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	107.3	0.5978
AT2G39580			unknown protein		Lus10029459 [exp]	118.1	0.5920
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Lus10037846 [exp]	129.2	0.5932
AT5G06810			Mitochondrial transcription te...		Lus10018548 [exp]	131.5	0.5639

Compare expression of checked genes

Lus10000119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.