Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04610 132 / 1e-35 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT4G26000 98 / 2e-23 PEP PEPPER, RNA-binding KH domain-containing protein (.1) AT5G46190 54 / 2e-08 RNA-binding KH domain-containing protein (.1) AT5G15270 53 / 4e-08 RNA-binding KH domain-containing protein (.1.2) AT5G64390 44 / 6e-05 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT1G51580 40 / 0.0007 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006565 [exp] 372 / 4e-128 AT3G04610 596 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10005530 [exp] 358 / 1e-122 AT3G04610 593 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10020163 [exp] 89 / 2e-20 AT4G26000 414 / 3e-141 PEPPER, RNA-binding KH domain-containing protein (.1) Lus10026963 [exp] 85 / 4e-19 AT4G26000 393 / 6e-134 PEPPER, RNA-binding KH domain-containing protein (.1) Lus10038509 [exp] 52 / 1e-07 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10023300 [exp] 51 / 2e-07 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10037163 [exp] 49 / 1e-06 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 48 / 3e-06 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10033557 [exp] 46 / 9e-06 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G056100 [exp] 162 / 8e-47 AT3G04610 566 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Potri.013G043000 [exp] 153 / 2e-43 AT3G04610 520 / 1e-180 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Potri.018G004000 [exp] 90 / 7e-21 AT4G26000 429 / 4e-147 PEPPER, RNA-binding KH domain-containing protein (.1) Potri.006G277200 [exp] 89 / 3e-20 AT4G26000 427 / 2e-146 PEPPER, RNA-binding KH domain-containing protein (.1) Potri.017G085500 [exp] 51 / 2e-07 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 50 / 3e-07 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 49 / 9e-07 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 49 / 1e-06 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.011G082500 [exp] 49 / 2e-06 AT5G46190 525 / 5e-180 RNA-binding KH domain-containing protein (.1) Potri.010G167100 [exp] 47 / 4e-06 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10000120 pacid=23156269 polypeptide=Lus10000120 locus=Lus10000120.g ID=Lus10000120.BGIv1.0 annot-version=v1.0 ATGGCTGAACTTGGTCATAGCATTGGTGACCACGAGATTGAGCATGCTGAACTTCCTGGTATTGAGCTTACAGCGGACGGAATGGTGGAACATGCCATAG ATGGTGTTGATCATGCCACGGAGCAGGATATAGATAATCTAGAAGGTCAGGACTTGGATTATATACCAGAACATGTTGACGAACAATCTCTTGACCCCAA TATGGATCAAGGTGTAGATGATGTTGGTAATGCTGTGAACTCCGATGTAGAACATGAAGCAGATCAAGAGGTAACAGTTGAACATGAGGATGAACACAGT TTAGATCAGCATTTAAACCAGGAAATTGGAGATATCGATGATCAGGATATTTCACAAGAAACTGAACACCTTCATGATCAAGAAAAACAAGAATGCGGAG AAGATACTGTAGTTGCTGATCCTGAAAAGAGGTGGCCTGGATGGCCTGGAGAGAGTGTCTTCCGTATGTTGGTTCCTGCACAGAAAGTTGGTAGTATAAT CGGGCGCAAGGGGGAGTTCATTAAGAAAATAGTAGAAGAGACAAGAGCTCGCGTGAAGATACTTGATGGTCCTCCAGGAACAGCAGAACGAGCATGTGTT GGCGTAATTGAACTGTTCCTGCTTTCCGAGAACACAATAACTCCTGAACTAATACTTCTAGATTGTTAA
AA sequence Show only first row Show all	>Lus10000120 pacid=23156269 polypeptide=Lus10000120 locus=Lus10000120.g ID=Lus10000120.BGIv1.0 annot-version=v1.0 MAELGHSIGDHEIEHAELPGIELTADGMVEHAIDGVDHATEQDIDNLEGQDLDYIPEHVDEQSLDPNMDQGVDDVGNAVNSDVEHEADQEVTVEHEDEHS LDQHLNQEIGDIDDQDISQETEHLHDQEKQECGEDTVVADPEKRWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARVKILDGPPGTAERACV GVIELFLLSENTITPELILLDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10000120 [exp]	0	1
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10024024 [exp]	2.4	0.9280
AT5G18230			transcription regulator NOT2/N...		Lus10020262 [exp]	4.6	0.9026
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10002169 [exp]	4.7	0.9168
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10005530 [exp]	6.3	0.8980
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Lus10040194 [exp]	10.7	0.8968
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10009112 [exp]	13.6	0.8514
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10017853 [exp]	18.7	0.8893
AT5G53620			unknown protein		Lus10032948 [exp]	22.7	0.8924
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10039885 [exp]	27.7	0.8485
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10037946 [exp]	28.7	0.8714

Compare expression of checked genes

Lus10000120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.