Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10620 316 / 7e-105 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G57180 219 / 5e-67 BPG2 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G47450 52 / 1e-07 RIF1, ATNOA1, ATNOS1, NOS1 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035986 [exp] 486 / 8e-172 AT4G10620 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016692 [exp] 446 / 3e-158 AT4G10620 501 / 1e-174 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031030 [exp] 220 / 2e-67 AT3G57180 731 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035420 [exp] 220 / 3e-67 AT3G57180 732 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031736 [exp] 45 / 3e-05 AT3G47450 622 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10031160 [exp] 45 / 4e-05 AT3G47450 719 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G010400 [exp] 361 / 2e-122 AT4G10620 695 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G044700 [exp] 232 / 1e-71 AT3G57180 750 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G124900 [exp] 51 / 3e-07 AT3G47450 727 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000122 pacid=23178419 polypeptide=Lus10000122 locus=Lus10000122.g ID=Lus10000122.BGIv1.0 annot-version=v1.0 ATGGCCAAATGTACTGCTGGTGGAGGAGGAGTTCAACCAAAGATAACTCATTTGACAGAGGCGCCTGTGCCTGGAACAACTCTTGGTATAGTCAGAGTCG ACGGTCTTCTTCCTGGAAACACAAAGGTGTTTGACACTCCTGGACTTCTCAACCCAAATCAGATTACAACTCGGTTGACTAGGGACGAGCAGAAGCTTGT TAATATTACCAAGGAGTTGAAACCAAGGACTTACAGAATCAAGGTAGGTCACTCAGTTCACATGGGTGGGCTTATGAGGGTAGACATTGAAGAATTATCA GTCGACTCCGTATATGTAACGGTGTGGGCATCACCGTATCTTCCACTGCACATGGGGAAAACTGAAAACATGGGCAATATGCTTGAAGAACATTTTGGCC GTCAGTTACAGCCTCCAATTGGGGAAAATCGAGTTGAAGAACTCGGAAAATGGGTGAGACACGAGTTCCATGTATCTGGGAATAGTTGGGCTGCAAGTTC TGTAGATATTGCTGCTGGAGGCCTGGGTTGGTTTGGCATCGGACTTAAAGGAGATGCAGTTGTAGGTGTTTGGACATATGAGGGAGTTGATGTGGTTCTT AGGAACTCTTTGATTCCTTATAGGGCAGAAATATTTGAAGTTGCAGGCTTTACAGTCTCAAAAATTGTGTCAAAAGCTGACCAAACTTTAAACAGACCAA AAAGTAAAAGTGAAAAGAAGAATAAGATGCAAAGCCAAGGGATACAAGTTGTAGCTGGTGATGCAGTTTGA
AA sequence Show only first row Show all	>Lus10000122 pacid=23178419 polypeptide=Lus10000122 locus=Lus10000122.g ID=Lus10000122.BGIv1.0 annot-version=v1.0 MAKCTAGGGGVQPKITHLTEAPVPGTTLGIVRVDGLLPGNTKVFDTPGLLNPNQITTRLTRDEQKLVNITKELKPRTYRIKVGHSVHMGGLMRVDIEELS VDSVYVTVWASPYLPLHMGKTENMGNMLEEHFGRQLQPPIGENRVEELGKWVRHEFHVSGNSWAASSVDIAAGGLGWFGIGLKGDAVVGVWTYEGVDVVL RNSLIPYRAEIFEVAGFTVSKIVSKADQTLNRPKSKSEKKNKMQSQGIQVVAGDAV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10620			P-loop containing nucleoside t...		Lus10000122 [exp]	0	1
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10012374 [exp]	1.0	0.7990
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10038377 [exp]	3.7	0.7641
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10012206 [exp]	4.2	0.7580
AT5G25752		ATRBL11	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10022131 [exp]	5.3	0.7247
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10004091 [exp]	7.4	0.6841
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10029014 [exp]	8.1	0.7072
AT3G19508			unknown protein		Lus10013875 [exp]	15.0	0.6846
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	21.5	0.6850
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	21.9	0.6835
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10000096 [exp]	22.0	0.6229

Compare expression of checked genes

Lus10000122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.