Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04360 284 / 3e-95 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016086 [exp] 558 / 0 AT2G04360 340 / 5e-117 unknown protein Lus10016084 [exp] 558 / 0 AT2G04360 340 / 5e-117 unknown protein Lus10012308 [exp] 527 / 0 AT2G04360 347 / 2e-119 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169200 [exp] 329 / 5e-113 AT2G04360 352 / 1e-121 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000124 pacid=23164444 polypeptide=Lus10000124 locus=Lus10000124.g ID=Lus10000124.BGIv1.0 annot-version=v1.0 ATGCTGGCCATTTCCAACCTCATTTCCTGCAACTTCTCTTCTTCACTTAATCCCAGAATCGGCAGACCTGCAATCAGCAGCTTATCCTCCCGCCAAACCC AATTCCTCAAGTCAAATTTCCCACCTTTACTTCACAGAACAGGTCTAAACTCCCCTATCTTCCTTAAACCCATCGCACATATCTCAATCCAGAACAAGGG TCTTCTTCAAATACGCTGTAGTGTTCTCAATCCGCAGGATGATTCAGAAAAGAAGGCTGGTCCAGACAATGAGAATCGAGAGGGTGAAAGCAGGGATTGG ACTACTTCAATCTTGTTGTTTGTGTTCTGGGGCGGTATCTTGTTCTATGTCTTCAATCTCACTCCGAACCAGACTCCGTCGAGGGACATGTATTTCTTGC AAAAGCTGTGTAATTTGAAGGGAGACGATGGGTTCAGGATGAATGAGGTCCTTGTTTCGTTGTGGTACATTACGGGTTTGTGGCCTTTAGCATATTCCAT GCTTCTGCTTCCAACTGGTAGAAGCTCAAAGAGTAGTATCCCAGTTTGGCCTTTCCTCGTACTCTCTTGCTTTGGTGGTGCTTATGCTCTTCTGCCCTAT TTCGTCCTATGGAACCCTCCTCCACCTTCTGTTGATGAAAGTGAACTCAAGAAGTGGCCACTCAATGTCATGAATTCCAAGTTGACTGCTGTTGCCTTGC TCGCTGCAGGATTCGGTCTCTTCATTCGTGCAGGAATATCGGTAGGAGACTGGAGTGAGTTCTTCCAGTACTTCAGGGAGAGCAAATTTATTCACGTCAC ATCTCTTGACTTCTCTTTGCTATCCTTGTTCGCTCCTTTCTGGGTTTACAACGACATGTCTGCTAGGAAATGGTGA
AA sequence Show only first row Show all	>Lus10000124 pacid=23164444 polypeptide=Lus10000124 locus=Lus10000124.g ID=Lus10000124.BGIv1.0 annot-version=v1.0 MLAISNLISCNFSSSLNPRIGRPAISSLSSRQTQFLKSNFPPLLHRTGLNSPIFLKPIAHISIQNKGLLQIRCSVLNPQDDSEKKAGPDNENREGESRDW TTSILLFVFWGGILFYVFNLTPNQTPSRDMYFLQKLCNLKGDDGFRMNEVLVSLWYITGLWPLAYSMLLLPTGRSSKSSIPVWPFLVLSCFGGAYALLPY FVLWNPPPPSVDESELKKWPLNVMNSKLTAVALLAAGFGLFIRAGISVGDWSEFFQYFRESKFIHVTSLDFSLLSLFAPFWVYNDMSARKW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04360			unknown protein		Lus10000124 [exp]	0	1
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Lus10006454 [exp]	7.1	0.7797
AT2G20830			transferases;folic acid bindin...		Lus10039789 [exp]	10.7	0.8082
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10041406 [exp]	12.5	0.8190
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10013083 [exp]	14.2	0.8340
AT1G14270			CAAX amino terminal protease f...		Lus10036748 [exp]	22.4	0.8141
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10022866 [exp]	25.5	0.7433
AT3G12110		ACT11	actin-11 (.1)		Lus10001693 [exp]	34.8	0.8131
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10027506 [exp]	35.5	0.7733
AT2G43945			unknown protein		Lus10020220 [exp]	41.3	0.7790
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10020012 [exp]	43.5	0.7575

Compare expression of checked genes

Lus10000124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.