Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51810 60 / 2e-13 AT3, GEA1, ATEM1 GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, Stress induced protein (.1) AT2G40170 55 / 4e-12 GEA6, ATEM6 LATE EMBRYOGENESIS ABUNDANT 6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, Stress induced protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027816 [exp] 74 / 3e-19 AT3G51810 155 / 8e-50 GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, Stress induced protein (.1) Lus10005044 [exp] 74 / 3e-19 AT3G51810 155 / 8e-50 GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, Stress induced protein (.1) Lus10037844 [exp] 51 / 2e-10 AT2G40170 130 / 4e-41 LATE EMBRYOGENESIS ABUNDANT 6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, Stress induced protein (.1) Lus10030394 [exp] 51 / 2e-10 AT2G40170 128 / 2e-40 LATE EMBRYOGENESIS ABUNDANT 6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, Stress induced protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G187100 [exp] 56 / 2e-12 AT2G40170 132 / 6e-42 LATE EMBRYOGENESIS ABUNDANT 6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, Stress induced protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0385 [flax] [poplar] Hydrophilin PF00477 [flax] [poplar] LEA_5 Small hydrophilic plant seed protein
Representative CDS sequence Show only first row Show all	>Lus10000125 pacid=23164121 polypeptide=Lus10000125 locus=Lus10000125.g ID=Lus10000125.BGIv1.0 annot-version=v1.0 ATGGGCCACCGTGGAGGGGAGACGAGGAAGGAACAGATGGGGACTGAAGGCTATCAGGAGATGGGTCGCAAAGGTGGTCTGAGCACCATGGACAAGTCTG GTGGAGAGCGTGCTGCCGAGGAAGGGATCGAGATCGATGAGTCCAAGTTCACCACCCGTACTTAA
AA sequence Show only first row Show all	>Lus10000125 pacid=23164121 polypeptide=Lus10000125 locus=Lus10000125.g ID=Lus10000125.BGIv1.0 annot-version=v1.0 MGHRGGETRKEQMGTEGYQEMGRKGGLSTMDKSGGERAAEEGIEIDESKFTTRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51810		AT3, GEA1, ATEM...	GUANINE NUCLEOTIDE EXCHANGE FA...		Lus10000125 [exp]	0	1
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004285 [exp]	6.6	0.6420
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	17.3	0.6370
AT3G15280			unknown protein		Lus10005404 [exp]	19.9	0.6267
AT1G14200			RING/U-box superfamily protein...		Lus10005237 [exp]	25.8	0.5469
AT2G29040			Exostosin family protein (.1)		Lus10003440 [exp]	36.5	0.5532
AT1G71520	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006179 [exp]	38.7	0.5338
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10002667 [exp]	43.7	0.5285
					Lus10006287 [exp]	45.7	0.5243
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029580 [exp]	54.2	0.5331
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019836 [exp]	56.7	0.5164

Compare expression of checked genes

Lus10000125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.