Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51820 253 / 1e-83 PDE325, ATG4, G4, CHLG PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027815 [exp] 265 / 1e-88 AT3G51820 604 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10002850 [exp] 242 / 5e-79 AT3G51820 518 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10003379 [exp] 239 / 9e-75 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102100 [exp] 256 / 3e-85 AT3G51820 547 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Potri.016G119400 [exp] 250 / 9e-83 AT3G51820 541 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF01040 [flax] [poplar] UbiA UbiA prenyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10000126 pacid=23164120 polypeptide=Lus10000126 locus=Lus10000126.g ID=Lus10000126.BGIv1.0 annot-version=v1.0 ATGAATAAGTCTCAAACCTTGTTCAAACGCTTGCAGCTTAAACAGAATGGATGGATAGGAAATTTCGCTCTTGGCGCGAGTTACATCAGTTTGCCGTGGT GGGCTGGGCAAGCTTTGTTTGGGACCCTTACACCTGACGTAATTGTTCTGACACTCCTCTACAGCATAGCCGGGCTGGGTATCGCCATTGTAAACGACTT CAAGAGTATTGAAGGAGACAGAGCGATGGGACTACAGGTTAGTCCCAGCCGCCATTCGTTACCTGTGGCCTTCGGTGCTGAAACGGCTAAATGGATCTGC GTTGGTGCCATCGACGTAACACAGTTATCCGTAGCGGTTTCTTACCTTGCTAAAATCTGCTCATCAGGATATCTCCTTGCATCTGGGAAACCTTACTACG CCTTGGCCCTCCTAGGACTGATAATTCCACAAGTCGTTCTCCAGTTCCAGTACTTCCTGAAGGACCCAGTCAAGTACGACGTCAAATACCAGGATTCCAG CTTCCATTACTCAAAAACAGTGGAGAATTCAACATCGTTACTAAGAAACATAAGGTTTGCAGACATGGCCAACTTCCATGTTCCACTCCGTTCCTAA
AA sequence Show only first row Show all	>Lus10000126 pacid=23164120 polypeptide=Lus10000126 locus=Lus10000126.g ID=Lus10000126.BGIv1.0 annot-version=v1.0 MNKSQTLFKRLQLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDVIVLTLLYSIAGLGIAIVNDFKSIEGDRAMGLQVSPSRHSLPVAFGAETAKWIC VGAIDVTQLSVAVSYLAKICSSGYLLASGKPYYALALLGLIIPQVVLQFQYFLKDPVKYDVKYQDSSFHYSKTVENSTSLLRNIRFADMANFHVPLRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10000126 [exp]	0	1
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10009392 [exp]	4.6	0.9256
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	5.3	0.9232
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10032542 [exp]	7.1	0.9232
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10004253 [exp]	7.1	0.8661
					Lus10008149 [exp]	8.9	0.8528
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10038400 [exp]	9.2	0.9145
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	11.8	0.9214
AT1G19720			Pentatricopeptide repeat (PPR-...		Lus10001230 [exp]	13.4	0.9136
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001332 [exp]	14.7	0.9128
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015112 [exp]	16.2	0.9030

Compare expression of checked genes

Lus10000126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.