Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46220 127 / 5e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040874 [exp] 218 / 2e-67 AT3G46220 980 / 0.0 unknown protein Lus10000152 [exp] 148 / 7e-47 AT3G46220 176 / 3e-52 unknown protein Lus10004920 [exp] 149 / 1e-42 AT3G46220 963 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234300 [exp] 142 / 2e-40 AT3G46220 978 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000127 pacid=23148139 polypeptide=Lus10000127 locus=Lus10000127.g ID=Lus10000127.BGIv1.0 annot-version=v1.0 ATGACATTAATCAGAAGTTCCCCGAAGGATTACGATCCAGTTCTCACTATATTCTTGCTTCTCGTACAGGCCAAAGGTCTTCCAGGATCCCTATCGAAGA AAGCTCAAACGCTTATAGAAGCTTTAGAAGGAAAGGATTTGACAGCTCAAGTGTCTGCAGAAACTGATCCAGTTGCACTTCTTCCTAAAGTTGTCTCCCT TCTTTATATTCAGATCCACAATAAAGCTCTCCAGGCTTCTGGACGTGCCATTTCTATTGCAGTTTCTCGATTGAAGGATAAATTGGATAGTTCAGCGTAC AAGATTCTGACGGATTACCAAACTGCAACCGTTAAACTCTTGGCTCTTTCATCTGCTGCAACTGGTGATGTAAGTGAAGTTCAAAACTAA
AA sequence Show only first row Show all	>Lus10000127 pacid=23148139 polypeptide=Lus10000127 locus=Lus10000127.g ID=Lus10000127.BGIv1.0 annot-version=v1.0 MTLIRSSPKDYDPVLTIFLLLVQAKGLPGSLSKKAQTLIEALEGKDLTAQVSAETDPVALLPKVVSLLYIQIHNKALQASGRAISIAVSRLKDKLDSSAY KILTDYQTATVKLLALSSAATGDVSEVQN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46220			unknown protein		Lus10000127 [exp]	0	1
AT3G47630			unknown protein		Lus10024227 [exp]	18.5	0.7850
AT3G51270			protein serine/threonine kinas...		Lus10017941 [exp]	36.3	0.7891
AT1G01150			Homeodomain-like protein with ...		Lus10026308 [exp]	52.6	0.7794
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10008599 [exp]	106.0	0.7379
AT1G25260			Ribosomal protein L10 family p...		Lus10030073 [exp]	106.9	0.7640
AT1G12390			Cornichon family protein (.1)		Lus10000384 [exp]	112.7	0.7585
AT4G23050			PAS domain-containing protein ...		Lus10024502 [exp]	131.9	0.7562
AT4G15030			unknown protein		Lus10029514 [exp]	182.4	0.7410
AT4G32360			Pyridine nucleotide-disulphide...		Lus10031463 [exp]	186.5	0.7215
AT5G19670			Exostosin family protein (.1)		Lus10011121 [exp]	234.3	0.7255

Compare expression of checked genes

Lus10000127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.