Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04280 115 / 2e-31 AtRZ-1c AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT1G60650 107 / 2e-28 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT3G26420 78 / 2e-17 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT4G39260 60 / 3e-12 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT2G21660 55 / 2e-09 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT5G61030 49 / 7e-07 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT3G23830 47 / 9e-07 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT4G13850 46 / 1e-06 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT1G60000 47 / 2e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G18630 44 / 9e-06 GR-RBP6 glycine-rich RNA-binding protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038683 [exp] 242 / 3e-81 AT5G04280 179 / 8e-55 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Lus10037950 [exp] 228 / 7e-75 AT5G04280 186 / 7e-57 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Lus10020953 [exp] 59 / 9e-11 AT3G26420 170 / 1e-52 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Lus10026344 [exp] 54 / 2e-09 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042320 [exp] 54 / 2e-09 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10023569 [exp] 52 / 1e-08 AT2G21660 147 / 8e-46 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026343 [exp] 52 / 2e-08 AT4G39260 145 / 1e-45 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) Lus10040454 [exp] 52 / 3e-08 AT2G21660 148 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10016639 [exp] 44 / 7e-06 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G228700 [exp] 145 / 6e-43 AT5G04280 172 / 7e-52 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.008G033000 [exp] 142 / 5e-42 AT1G60650 172 / 3e-52 AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Potri.001G207100 [exp] 76 / 4e-17 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.004G155300 [exp] 51 / 3e-08 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.009G116400 [exp] 51 / 5e-08 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.016G090700 [exp] 47 / 3e-06 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G340800 [exp] 47 / 3e-06 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G344900 [exp] 47 / 3e-06 AT5G40490 286 / 1e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G059000 [exp] 44 / 9e-06 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.015G057400 [exp] 45 / 1e-05 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10000128 pacid=23165716 polypeptide=Lus10000128 locus=Lus10000128.g ID=Lus10000128.BGIv1.0 annot-version=v1.0 ATGGTGGAAAGAGATACAGGACGTTCCCGTGGTTTCGGATTTATCACCTACTCTGATCGACGGGGAATGGAAGATGCAATTCGTGAGATGCATAACCGGG AGCTTGCTGATCGTGTAATTTCTGTGAACAAGGCCCAACCTAAAATAGGTGATGACATAGAACCGAGCTACCGGGGAGGCTACTCTGACAATCGCTATAG GGGAGGCTTTCAATCAGGTGGTAGGGGACGCTATGGGGGAGGAGACAGGCCTGTTGGCCAGGATGAGTGTTACAAGTGCGGCCGGCCAGGGCATTGGGCT CGGGACTGCCCAACATCAGGTGGACGAGAGAGTGGAGGTGCTTTCCCTCCAAGGTCTGGGTTTGGTGGCCCTGCTGATCGTGGGGATCACTTTAGAGGAG ATCGTGAGCGCTACATAGATGATCGCTATGATGGAGGGCGCTATATGGATAGAGATCGCTTTGAGAGTAGAGACAAATATGTGACCCGTGATCGTTTTGC CAATGACAGGTACCCTTCATCTTTAAAAAGTGAATTTGACAACCACTGTCAACTTTTTGGATTGTTTCATAGACCGACTTAA
AA sequence Show only first row Show all	>Lus10000128 pacid=23165716 polypeptide=Lus10000128 locus=Lus10000128.g ID=Lus10000128.BGIv1.0 annot-version=v1.0 MVERDTGRSRGFGFITYSDRRGMEDAIREMHNRELADRVISVNKAQPKIGDDIEPSYRGGYSDNRYRGGFQSGGRGRYGGGDRPVGQDECYKCGRPGHWA RDCPTSGGRESGGAFPPRSGFGGPADRGDHFRGDRERYIDDRYDGGRYMDRDRFESRDKYVTRDRFANDRYPSSLKSEFDNHCQLFGLFHRPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10000128 [exp]	0	1
AT1G61700			RNA polymerases N / 8 kDa subu...		Lus10038195 [exp]	1.4	0.7727
AT3G60480			unknown protein		Lus10034728 [exp]	7.3	0.7116
AT2G26110			Protein of unknown function (D...		Lus10026978 [exp]	12.4	0.6702
AT2G29540		ATRPAC14, ATRPC...	RNApolymerase 14 kDa subunit (...		Lus10016452 [exp]	17.0	0.6766
AT5G62270			unknown protein		Lus10034311 [exp]	20.9	0.6931
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039482 [exp]	22.6	0.6541
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10038683 [exp]	24.5	0.6779
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10037505 [exp]	28.3	0.6708
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10012374 [exp]	29.7	0.6457
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10032700 [exp]	32.4	0.6313

Compare expression of checked genes

Lus10000128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.