Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09890 348 / 7e-117 Rhamnogalacturonate lyase family protein (.1) AT4G24430 343 / 2e-114 Rhamnogalacturonate lyase family protein (.1) AT1G09910 337 / 7e-112 Rhamnogalacturonate lyase family protein (.1) AT1G09880 309 / 2e-101 Rhamnogalacturonate lyase family protein (.1) AT4G38030 284 / 1e-91 Rhamnogalacturonate lyase family protein (.1) AT2G22620 280 / 5e-90 Rhamnogalacturonate lyase family protein (.1.2) AT4G37950 251 / 6e-79 Rhamnogalacturonate lyase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030233 [exp] 546 / 0 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10000111 [exp] 464 / 4e-167 AT1G09890 331 / 8e-110 Rhamnogalacturonate lyase family protein (.1) Lus10028212 [exp] 352 / 6e-118 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10000684 [exp] 341 / 4e-113 AT1G09910 842 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10005979 [exp] 323 / 4e-106 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10005978 [exp] 289 / 9e-94 AT4G24430 630 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10039627 [exp] 281 / 8e-91 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10019231 [exp] 268 / 6e-85 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10004281 [exp] 266 / 2e-84 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110200 [exp] 407 / 1e-139 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 382 / 9e-130 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110000 [exp] 360 / 3e-121 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.005G151500 [exp] 344 / 2e-114 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110100 [exp] 323 / 2e-106 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.014G004500 [exp] 290 / 1e-93 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.006G218500 [exp] 289 / 4e-93 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.011G006200 [exp] 272 / 5e-87 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF06045 [flax] [poplar] Rhamnogal_lyase Rhamnogalacturonate lyase family
Representative CDS sequence Show only first row Show all	>Lus10000129 pacid=23161999 polypeptide=Lus10000129 locus=Lus10000129.g ID=Lus10000129.BGIv1.0 annot-version=v1.0 ATGGCATCACCAACTTGCTCGAAGTATTGGGACCTTGTTTGGAGTAAAGAAGGGAGCACAGGAACAAAAGGAACTCAGGAAAGAATTAGTGGGACAGAAT TCAGTGTGATAGTGGAAAATGAGGGACAAGTCGAAGTCTCATTTGCAAGAACATGGGATCCTTCCCTTGAAGGCCAGCTTCCTTCTCTTAACATAGACAA GAGGTTCATATTGCTTCGAAACTCGTCGGGATTCTACTCGTACGCGATTTTTGAGCACTTGCCTGAATGGACCCCTTTCCACCTCCCACAAGTCAGGATA GTGTTCAAGCTCAATAAAGACAAGTTCCATTACATGGCTGTGGGAGATTCCAGACAGAGATTCATGCCATTACCAGATGACAGGCTACCAGAGAGATGCA AAGAACTTGATTTTCCTGAAGCTGTGTTACTTGTCAACCCTGTGGAACCACAATTTCAAGGAGAGGTGGACGATAAGTACCAGTATTCTTGTGAAAACAA GGATCTTAAAGTGCATGGATGGATAAGCTCGGATCCAGCAGTAGGATTCTGGCAGATCACACCTAGCAATGAGTTCAGATCAGGTGGACTAGTGAAACAG AACCTCACATCTCATTGTGGTCCGATCAATCTCGCTATGTTTCTGAGTGCTCACTATGCTGGTGATGATATGGTCCTGAAACTCAAACCAGGGGAGGGCT GGAAGAAAGTCCTTGGTCCTGTCTTTATGTATCTCAACACGGTGGCTGCCGACGACCACGGAGGAGGAAAGATCGACCCACTACTTTCCTTATGGGAAGA TGCCAAGCAACAGGGGTAA
AA sequence Show only first row Show all	>Lus10000129 pacid=23161999 polypeptide=Lus10000129 locus=Lus10000129.g ID=Lus10000129.BGIv1.0 annot-version=v1.0 MASPTCSKYWDLVWSKEGSTGTKGTQERISGTEFSVIVENEGQVEVSFARTWDPSLEGQLPSLNIDKRFILLRNSSGFYSYAIFEHLPEWTPFHLPQVRI VFKLNKDKFHYMAVGDSRQRFMPLPDDRLPERCKELDFPEAVLLVNPVEPQFQGEVDDKYQYSCENKDLKVHGWISSDPAVGFWQITPSNEFRSGGLVKQ NLTSHCGPINLAMFLSAHYAGDDMVLKLKPGEGWKKVLGPVFMYLNTVAADDHGGGKIDPLLSLWEDAKQQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10000129 [exp]	0	1
AT4G24430			Rhamnogalacturonate lyase fami...		Lus10005978 [exp]	1.0	0.9198
AT4G24430			Rhamnogalacturonate lyase fami...		Lus10030233 [exp]	2.0	0.8958
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Lus10042833 [exp]	3.5	0.8025
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025142 [exp]	6.0	0.8009
AT1G08620		PKDM7D	Transcription factor jumonji (...		Lus10003548 [exp]	8.9	0.7101
AT4G23500			Pectin lyase-like superfamily ...		Lus10017517 [exp]	13.6	0.7564
AT2G39130			Transmembrane amino acid trans...		Lus10037974 [exp]	20.0	0.6835
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Lus10041534 [exp]	24.5	0.7808
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	26.9	0.7471
AT2G26450			Plant invertase/pectin methyle...		Lus10002976 [exp]	27.1	0.7010

Compare expression of checked genes

Lus10000129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.