Plant FIBer expression Database

Lus10000130 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14140 215 / 1e-70 C2H2ZnF zinc ion binding;nucleic acid binding;zinc ion binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032036
[exp]
372 / 5e-131 AT5G14140 289 / 5e-97 zinc ion binding;nucleic acid binding;zinc ion binding (.1)
Lus10035205
[exp]
320 / 4e-112 AT5G14140 267 / 4e-90 zinc ion binding;nucleic acid binding;zinc ion binding (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G329300
[exp]
226 / 4e-75 AT5G14140 311 / 2e-107 zinc ion binding;nucleic acid binding;zinc ion binding (.1)
PFAM info
Representative CDS sequence
>Lus10000130 pacid=23162083 polypeptide=Lus10000130 locus=Lus10000130.g ID=Lus10000130.BGIv1.0 annot-version=v1.0
ATGGATGAAGATGCCGAGGTGATGTTTTGTCCAATCGTTGGCTGTCGTGCACCTTTGTCAACTATGGGGTTCGAAAACCACTATATATCACAGCATACTG
CTGCATGTTCCGTATGCCATAGAGCATACCCAACCTCTCGCTTGCTCAGCATGCACATCTCTGAAGCACACGATTCCTTCTTCCAGGCAAAAGTTGCACG
TGGTTACCCCATGTACGAATGCTTGGTGGAAGGTTGCGGTTTAAAATTCAAGAGTTACAAAGGCAGGCAGAAGCACTTGGTGGACAAACATAAATTCCCC
GCTTCGTACGATTTCTTCAAGAAGGGTCACCATCTATCCAAGAAGGCCAGGGGAAAGATTCATTGCAAAAAAACAACAGCAACCCGCAAAAATGACGAGG
AAGGATCGAGCAAAATGGACGCAGATGAAGAAGAAGAAGTCGAGAATCTCACTTCAGCATTGTCCAAAATGACCACCGGTTCAACTCCTAAATCAGTATC
CTTCGGTCGAGGCAACGCTCGTGGACTCACGTTCGTCCCCCGATCTGTCCAGCGTGACGTCAAGAAACCAGATCCGACGCCACGCCCATAG
AA sequence
>Lus10000130 pacid=23162083 polypeptide=Lus10000130 locus=Lus10000130.g ID=Lus10000130.BGIv1.0 annot-version=v1.0
MDEDAEVMFCPIVGCRAPLSTMGFENHYISQHTAACSVCHRAYPTSRLLSMHISEAHDSFFQAKVARGYPMYECLVEGCGLKFKSYKGRQKHLVDKHKFP
ASYDFFKKGHHLSKKARGKIHCKKTTATRKNDEEGSSKMDADEEEEVENLTSALSKMTTGSTPKSVSFGRGNARGLTFVPRSVQRDVKKPDPTPRP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G14140 C2H2ZnF zinc ion binding;nucleic acid ... Lus10000130
[exp]
0 1
AT5G49920 Octicosapeptide/Phox/Bem1p fam... Lus10035772
[exp]
12.7 0.7010
AT3G56850 bZIP DPBF3, AREB3 ABA-responsive element binding... Lus10008927
[exp]
14.5 0.7935
AT2G28380 DRB2 dsRNA-binding protein 2 (.1) Lus10021471
[exp]
19.6 0.7390
AT1G01730 unknown protein Lus10030384
[exp]
24.2 0.7555
AT3G60850 unknown protein Lus10004021
[exp]
37.8 0.6932
AT4G31300 PBA1 N-terminal nucleophile aminohy... Lus10026984
[exp]
61.2 0.6311
AT5G64360 EIP9 EMF1-Interacting Protein 1, Ch... Lus10015692
[exp]
74.8 0.6969
Lus10000079
[exp]
104.9 0.6956
AT2G23070 Protein kinase superfamily pro... Lus10011526
[exp]
120.5 0.6446
AT2G01710 Chaperone DnaJ-domain superfam... Lus10009275
[exp]
127.4 0.6779

Lus10000130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.