Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65430 183 / 7e-55 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) AT2G31760 182 / 9e-55 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT2G31510 182 / 2e-54 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT2G31770 178 / 4e-53 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1) AT1G05890 163 / 2e-47 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT2G31780 120 / 8e-32 ATARI11 ARABIDOPSIS ARIADNE 11, ARIADNE 11, RING/U-box superfamily protein (.1) AT1G05880 94 / 2e-22 ATARI12, ARI12 ARABIDOPSIS ARIADNE 12, ARIADNE 12, RING/U-box superfamily protein (.1.2) AT5G63750 64 / 7e-12 ATARI13, ARI13 ARABIDOPSIS ARIADNE 13, ARIADNE 13, RING/U-box superfamily protein (.1) AT5G63730 60 / 1e-10 ATARI14, ARI14 ARABIDOPSIS ARIADNE 14, ARIADNE 14, IBR domain-containing protein (.1) AT5G08730 55 / 6e-09 ATARI16, ARI16 ARABIDOPSIS ARIADNE 16, ARIADNE 16, IBR domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026856 [exp] 182 / 4e-54 AT1G65430 887 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10027027 [exp] 181 / 7e-54 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10025566 [exp] 181 / 7e-54 AT2G31510 826 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10020229 [exp] 145 / 4e-40 AT1G65430 833 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10013371 [exp] 140 / 7e-39 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10042348 [exp] 49 / 1e-06 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10026319 [exp] 49 / 2e-06 AT2G16090 788 / 0.0 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) Lus10040508 [exp] 49 / 2e-06 AT4G34370 746 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10011309 [exp] 43 / 0.0001 AT4G34370 731 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G131300 [exp] 208 / 5e-64 AT1G65430 536 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.017G032000 [exp] 191 / 1e-57 AT2G31510 834 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.007G126900 [exp] 182 / 1e-54 AT2G31510 836 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.002G131200 [exp] 177 / 1e-52 AT1G65430 571 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.010G180600 [exp] 177 / 1e-52 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.008G077100 [exp] 177 / 1e-52 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.T124304 [exp] 47 / 4e-06 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 47 / 4e-06 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000131 pacid=23162033 polypeptide=Lus10000131 locus=Lus10000131.g ID=Lus10000131.BGIv1.0 annot-version=v1.0 ATGCACATGACCTGTCCAGCTCCATGCCTGTACCGCTTCTGTTGGGTATGCCTCGCCCCATTGCAGAATCACAGATTCTGCAATCGCTACACCGAAAAGG AGGACGATGCATCATTGACTTCACTTAGAAAGGAACCGAGGAGGTACCAACACTACTATGATCGATGGGCTGTGAATGAGAAGTCTAGGAATATCGCAAT GAGAGACCTAGAGAATGTAAGGATGAATGTGGTTTCAGCGATTAGCAAGGTACATGGTCAAGATTTTGTGGAGTTGATGTTCTTGACGGAAGGATGGGAA CAGATTGTGGAGTGTAGAAGGGTTCGGAAATGGACATATGCATATGGGTTTTACTTGCCGGATAAAGAAGCTGCCAAGAAGCAGTTTTTTAAGTACCTGC AACTTCAGGCTGAGACGTGTCTTGACAAGCTTCACGATTATGCAGAGAGTGAAATGAAGAAGTTTGTGAAGGTGGGAAGCAGCATCCATGAGTATGTTGC CTTCCGGATGAAGCTCAAGGAACTCATCAAACTGAACAAGAATTACGTTGACAACTTGGTATCTGTTTTGGAGAATGGATTGACAGATGTTCAAACGGTT CGAATCGGTATACGAAGAGCATGCACGGACTGA
AA sequence Show only first row Show all	>Lus10000131 pacid=23162033 polypeptide=Lus10000131 locus=Lus10000131.g ID=Lus10000131.BGIv1.0 annot-version=v1.0 MHMTCPAPCLYRFCWVCLAPLQNHRFCNRYTEKEDDASLTSLRKEPRRYQHYYDRWAVNEKSRNIAMRDLENVRMNVVSAISKVHGQDFVELMFLTEGWE QIVECRRVRKWTYAYGFYLPDKEAAKKQFFKYLQLQAETCLDKLHDYAESEMKKFVKVGSSIHEYVAFRMKLKELIKLNKNYVDNLVSVLENGLTDVQTV RIGIRRACTD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31760		ATARI10, ARI10	ARABIDOPSIS ARIADNE 10, ARIADN...		Lus10000131 [exp]	0	1
AT2G16190			unknown protein		Lus10040480 [exp]	1.0	0.7250
AT4G16195			Plant self-incompatibility pro...		Lus10017929 [exp]	6.8	0.6909
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10016168 [exp]	8.3	0.6909
					Lus10034545 [exp]	9.6	0.6909
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007059 [exp]	10.7	0.6909
AT5G67090			Subtilisin-like serine endopep...		Lus10002044 [exp]	11.7	0.6909
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039166 [exp]	12.0	0.5686
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10022732 [exp]	17.9	0.5869
AT1G08790			Protein of unknown function (D...		Lus10042536 [exp]	18.2	0.6207
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10042979 [exp]	19.3	0.5498

Compare expression of checked genes

Lus10000131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.