Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46060 96 / 5e-24 Protein of unknown function, DUF599 (.1) AT3G18215 88 / 5e-21 Protein of unknown function, DUF599 (.1) AT5G24600 76 / 2e-16 Protein of unknown function, DUF599 (.1.2) AT5G10580 54 / 2e-08 Protein of unknown function, DUF599 (.1.2) AT4G31330 49 / 5e-07 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005267 [exp] 431 / 2e-155 AT5G46060 98 / 9e-25 Protein of unknown function, DUF599 (.1) Lus10013944 [exp] 380 / 1e-135 AT5G46060 100 / 3e-31 Protein of unknown function, DUF599 (.1) Lus10005266 [exp] 119 / 5e-33 AT5G46060 207 / 4e-67 Protein of unknown function, DUF599 (.1) Lus10013943 [exp] 119 / 1e-32 AT5G46060 212 / 5e-69 Protein of unknown function, DUF599 (.1) Lus10009010 [exp] 86 / 3e-20 AT3G18215 317 / 2e-110 Protein of unknown function, DUF599 (.1) Lus10005272 [exp] 87 / 6e-20 AT5G24600 267 / 8e-90 Protein of unknown function, DUF599 (.1.2) Lus10013947 [exp] 86 / 8e-20 AT5G24600 272 / 6e-92 Protein of unknown function, DUF599 (.1.2) Lus10032916 [exp] 74 / 2e-15 AT5G24600 292 / 6e-100 Protein of unknown function, DUF599 (.1.2) Lus10015590 [exp] 73 / 4e-15 AT5G24600 291 / 2e-99 Protein of unknown function, DUF599 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G059400 [exp] 189 / 4e-60 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1) Potri.001G372900 [exp] 105 / 1e-27 AT5G46060 145 / 6e-43 Protein of unknown function, DUF599 (.1) Potri.015G001300 [exp] 84 / 2e-19 AT5G24600 322 / 4e-112 Protein of unknown function, DUF599 (.1.2) Potri.015G001500 [exp] 82 / 1e-18 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.006G278000 [exp] 47 / 2e-06 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.016G137800 [exp] 42 / 0.0002 AT5G43180 174 / 5e-54 Protein of unknown function, DUF599 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [flax] [poplar] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Lus10000133 pacid=23176138 polypeptide=Lus10000133 locus=Lus10000133.g ID=Lus10000133.BGIv1.0 annot-version=v1.0 ATGGAGTTCGAAAAGGATTACCTCGACTTGTTCTTAGTACCGTCCGGCTTCTCATCCTCTTCACTTACCATCTTTACCTTCTCTACTTGCACCACAAGTC ACCTTGCTCCACAACAATCGGCCTCGAAGCATTCGACAAGATCAACTGGGTTCAAACCATCGTCAGGGCAAAATGGCGAGAAGGGCACGTTAGACAGAGC AGCGGCTGCGATCACAGGCAACACGACATCGGGGACATACCTCGCGACATTCTGCCTGACTCTAAGCTCGCTAGTCGGTACATTTCTCGGGCCCTCGAAC AGCTTGATCAACGGCAGCCGAATCTACGGAGACACAAGGCCGTCCACTCTTTTCATCAAGGACATCACGCTCCTCTCATGCTTACTCCTCGCGTTCTACG GATTCGTTCACGCTGTCAGGCTTCTGGTCCACGCCAACTACTTGCTGTTGATGAGCAGTCCGGAGAACAAGGATCTCGAGAAGAAAATCGAGTTCATGGT TACTAGAGGTGGATACTCTTGGGTGCTTGGACTCAGACCGCTCTACTTTGCTCTCAGTGTTCTTGTCTGGTTCTTCGGTCCCATACCCATGTTCACTTCT TGCATCGTCATGGTTATCGTCCTGTATTACAACAACATTTACATAGTCAAGTTGCACAACCTGTATTGTCGAATCCCGGAAAGCTATAGGTACTGA
AA sequence Show only first row Show all	>Lus10000133 pacid=23176138 polypeptide=Lus10000133 locus=Lus10000133.g ID=Lus10000133.BGIv1.0 annot-version=v1.0 MEFEKDYLDLFLVPSGFSSSSLTIFTFSTCTTSHLAPQQSASKHSTRSTGFKPSSGQNGEKGTLDRAAAAITGNTTSGTYLATFCLTLSSLVGTFLGPSN SLINGSRIYGDTRPSTLFIKDITLLSCLLLAFYGFVHAVRLLVHANYLLLMSSPENKDLEKKIEFMVTRGGYSWVLGLRPLYFALSVLVWFFGPIPMFTS CIVMVIVLYYNNIYIVKLHNLYCRIPESYRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46060			Protein of unknown function, D...		Lus10000133 [exp]	0	1
AT5G46060			Protein of unknown function, D...		Lus10005267 [exp]	5.7	0.8306
AT3G08680			Leucine-rich repeat protein ki...		Lus10021383 [exp]	9.1	0.8486
					Lus10031802 [exp]	10.4	0.7582
AT4G04980			unknown protein		Lus10036173 [exp]	18.7	0.7746
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10014714 [exp]	18.8	0.8312
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10027634 [exp]	19.7	0.7911
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10013016 [exp]	19.9	0.8053
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	22.6	0.8320
AT2G04865			Aminotransferase-like, plant m...		Lus10012346 [exp]	28.6	0.7225
AT2G04480			unknown protein		Lus10001750 [exp]	30.2	0.7727

Compare expression of checked genes

Lus10000133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.