Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13530 395 / 8e-129 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT3G07980 368 / 7e-119 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010209 [exp] 452 / 3e-150 AT3G13530 1800 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10017408 [exp] 455 / 9e-148 AT3G13530 1761 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G094200 [exp] 416 / 4e-136 AT3G13530 1979 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.007G070100 [exp] 399 / 5e-130 AT3G13530 1960 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000135 pacid=23170693 polypeptide=Lus10000135 locus=Lus10000135.g ID=Lus10000135.BGIv1.0 annot-version=v1.0 ATGGTGTCAACAATGAACGCCGATGTTGCCAGGGAGTACCTTGAAAAGGTGGCTGACCTTCTACTTGAGTTTGCTCAAGCTGATACGACTGTCAAATCTT ATATGTGCAGCCAAAGCTTGCTTAGCCGTCTCTTCCAGATGTTCAACAAAATTGAGCCCCCTATACTCCTCAAGATCCTAAAGTGCATCAATAATCTATC TTGTGATCCTAACTGCTTAGAGAATCTTCAGCGGGCAGATGCAATTAAGTTCTTGATCCCAAACCTTGAACTGAAAGATGGACCTCTAGTTGGCCAAATC CACGACGAGGTTCTTCATGCGCTCTTTAACCTGTGTAAGATAAACAAGAGGAGACAGGAACAAGCTGCTGAAAATGGAATCATACCTCACCTCATGAATT TCATCATGCAAGGATCTCGCTTGAAACAATATGCATTGCCTTTGCTATGCGACATGGCCCACGCATCGCGCAACTCCAGAGAACAACTGAGGGCTCATGG TGGATTGGATGTTTACTTGAGCCTTCTGGATGATGCATCGTGGTCTGTAACTGCATTGGATTCCATCGCTGTTTGTTTGGCTCATGACAACGACAACCGC AAAGTAGAGCAAGCCTTGCTTAAAAAAGATGCTATTAACAAATTAGTCAAGTTTTTCCAGAGCTGTCCGGAGCAACAATTCGTTCATATCCTGGAGCCCT TCTTGAAAATCATCACGTAA
AA sequence Show only first row Show all	>Lus10000135 pacid=23170693 polypeptide=Lus10000135 locus=Lus10000135.g ID=Lus10000135.BGIv1.0 annot-version=v1.0 MVSTMNADVAREYLEKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNKIEPPILLKILKCINNLSCDPNCLENLQRADAIKFLIPNLELKDGPLVGQI HDEVLHALFNLCKINKRRQEQAAENGIIPHLMNFIMQGSRLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLDDASWSVTALDSIAVCLAHDNDNR KVEQALLKKDAINKLVKFFQSCPEQQFVHILEPFLKIIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10000135 [exp]	0	1
AT5G06560			Protein of unknown function, D...		Lus10012288 [exp]	2.4	0.8643
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10032358 [exp]	3.0	0.8596
AT1G30470			SIT4 phosphatase-associated fa...		Lus10023354 [exp]	3.5	0.8658
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10026018 [exp]	8.9	0.8468
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10031369 [exp]	13.0	0.8411
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10042973 [exp]	13.1	0.8368
AT4G02030			Vps51/Vps67 family (components...		Lus10041387 [exp]	14.1	0.8340
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10014310 [exp]	14.1	0.8375
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10003315 [exp]	15.1	0.8503
AT2G28320			Pleckstrin homology (PH) and l...		Lus10016094 [exp]	16.7	0.8149

Compare expression of checked genes

Lus10000135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.