Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29670 105 / 9e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19050 99 / 1e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 98 / 6e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G45670 98 / 7e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 92 / 2e-22 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G37690 93 / 3e-22 SGNH hydrolase-type esterase superfamily protein (.1) AT2G19060 92 / 6e-22 SGNH hydrolase-type esterase superfamily protein (.1) AT1G29660 90 / 4e-21 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G30140 88 / 2e-20 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 87 / 6e-20 GLIP7 GDSL-motif lipase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012000 [exp] 370 / 2e-132 AT1G29670 105 / 3e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002773 [exp] 262 / 1e-87 AT5G45670 283 / 1e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012002 [exp] 187 / 2e-58 AT5G45670 295 / 5e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029281 [exp] 186 / 1e-57 AT1G29670 270 / 3e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012001 [exp] 177 / 3e-55 AT1G29670 103 / 1e-25 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029280 [exp] 176 / 9e-54 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002772 [exp] 174 / 5e-53 AT1G29670 275 / 4e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002770 [exp] 170 / 5e-50 AT1G29670 307 / 2e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10009455 [exp] 115 / 7e-31 AT1G71691 232 / 2e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G008100 [exp] 106 / 4e-27 AT1G29670 345 / 8e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G060700 [exp] 104 / 1e-26 AT1G29660 306 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 104 / 3e-26 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 100 / 1e-24 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 98 / 3e-24 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 97 / 1e-23 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 97 / 1e-23 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008404 [exp] 97 / 2e-23 AT1G29670 281 / 5e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 96 / 2e-23 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 95 / 6e-23 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10000136 pacid=23175101 polypeptide=Lus10000136 locus=Lus10000136.g ID=Lus10000136.BGIv1.0 annot-version=v1.0 ATGGCGTTGGCTTCCCCGCCTGCGGACCAACCGGGAGGATCAGCGACGGCCGTACCATCGCCGACATACCTGTTGACATTTTGGCATGTGCCCACAGGTG AAGTGATGGGGTTTGAAAGCTTCATCCCACCTTTTGCGTCCAATCCTAACATATCGGAGTTACTCGTCGGAGTAAATTATGCATTGGCGTCGGCCGGAAT TCTAGTGAAAAGTGGGAAACAAGGGAGGATGTACAAGTTGGGAGCAAGGAAGGTCGGGTTAGTTGGGGTGTCATCGGTGGGGTGCACCCCAGGTGCAATT GCATTAGTCGGTAGGACAAATGGCTCACTATGTGCCGAGTCAATGAACCAATTAGTGACCCCGTTCAACGACCGCCTTGGTTCGCTTATTGATCAGTTCA ACGTCAATTTTCCTGATGCGAAATTCGTGTACCTGAACTCCACATTTGCTAACCAACTTGCCATCCAAGGATTCAAAGTCAAAACGGCGCCGTGTTGCAA AGTGAGTTCTGTTACAGGATTGTGCATCATGAACTCCGCTACGTGCAAGGCGAGACGGTCACATTTTTTCTCGGACGCATTCCATCCGTCCGAATCTTCG AACCGGCTCGTCGCATATTTTTTCTATCAAGCTATCAAATCGATCTTGTGA
AA sequence Show only first row Show all	>Lus10000136 pacid=23175101 polypeptide=Lus10000136 locus=Lus10000136.g ID=Lus10000136.BGIv1.0 annot-version=v1.0 MALASPPADQPGGSATAVPSPTYLLTFWHVPTGEVMGFESFIPPFASNPNISELLVGVNYALASAGILVKSGKQGRMYKLGARKVGLVGVSSVGCTPGAI ALVGRTNGSLCAESMNQLVTPFNDRLGSLIDQFNVNFPDAKFVYLNSTFANQLAIQGFKVKTAPCCKVSSVTGLCIMNSATCKARRSHFFSDAFHPSESS NRLVAYFFYQAIKSIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10000136 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10012000 [exp]	1.0	0.8094
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10034301 [exp]	22.0	0.8000
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10005294 [exp]	38.8	0.7777
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Lus10002312 [exp]	40.6	0.7830
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Lus10009203 [exp]	56.3	0.7616
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10016545 [exp]	76.4	0.7443
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Lus10008780 [exp]	86.2	0.7397
					Lus10003883 [exp]	90.6	0.7284
AT4G23900			Nucleoside diphosphate kinase ...		Lus10001824 [exp]	96.2	0.7323
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002773 [exp]	114.9	0.7330

Compare expression of checked genes

Lus10000136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.