Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19270 195 / 2e-60 DA1 DA1 (.1) AT4G36860 181 / 9e-55 DAR1 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) AT2G39830 171 / 3e-51 LRD3, DAR2 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) AT5G66620 117 / 4e-31 DAR6 DA1-related protein 6 (.1) AT5G66610 110 / 1e-28 DAR7 DA1-related protein 7 (.1.2) AT5G17890 105 / 1e-26 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1) AT5G66630 103 / 3e-26 DAR5 DA1-related protein 5 (.1) AT5G66640 85 / 1e-19 DAR3 DA1-related protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010033 [exp] 281 / 5e-94 AT1G19270 657 / 0.0 DA1 (.1) Lus10016298 [exp] 273 / 4e-91 AT1G19270 646 / 0.0 DA1 (.1) Lus10018789 [exp] 238 / 2e-77 AT1G19270 575 / 0.0 DA1 (.1) Lus10032736 [exp] 233 / 3e-75 AT1G19270 628 / 0.0 DA1 (.1) Lus10022486 [exp] 178 / 4e-54 AT4G36860 679 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10016791 [exp] 177 / 3e-53 AT4G36860 669 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10004690 [exp] 173 / 5e-52 AT2G39830 560 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10040258 [exp] 173 / 9e-51 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G039900 [exp] 224 / 6e-72 AT1G19270 654 / 0.0 DA1 (.1) Potri.002G132700 [exp] 221 / 5e-71 AT1G19270 669 / 0.0 DA1 (.1) Potri.007G032500 [exp] 188 / 1e-57 AT4G36860 675 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.005G128900 [exp] 184 / 2e-56 AT4G36860 696 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.005G128800 [exp] 174 / 2e-52 AT4G36860 662 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.010G197500 [exp] 173 / 2e-52 AT2G39830 688 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Potri.T124504 [exp] 77 / 3e-17 AT1G19270 182 / 3e-53 DA1 (.1) Potri.009G111446 [exp] 69 / 2e-15 AT2G39830 92 / 7e-23 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF12315 [flax] [poplar] DA1-like Protein DA1
Representative CDS sequence Show only first row Show all	>Lus10000138 pacid=23163410 polypeptide=Lus10000138 locus=Lus10000138.g ID=Lus10000138.BGIv1.0 annot-version=v1.0 ATGCCAGAAACCAGAGGCCTCTGCCTTTCTGAGGAGCAAACAATCAGCACAGTACGGAGACCAAAATCTGGTGGACACCGATCCATGGACATGATAACGG AGCCTTACAAACTCACACGGAGATGTGATGTCACCGCCATTCTCATATTGTATGGTCTCCCAAGAGAAGATGCTGATGGATTGATAATATATATGCTGCA AGGTTTCCAACCTCTAAGTCAAGACATTGAAGAGGGCATTTGCCAGGTGCTTGCACACATGTGGTTAGATTCGCAGCTGAGCTTTGAAACATCATCTTCG TCAGCTGGTTCAAGAAACAGTTCAAGGCCGCCCTTTGAGAAAAAGCTAGGAGCTTTCTTCAAGCATCAGATTGAGTCAGACAGTTCTCCAGTGTATGGAG ATGGGTTCAGAGCCGGTCAGCAAGCAATACGTAAATATGGGCTTCAAAGAACTCTTGAACATATCCGAATGACTGGGAGGTTCCCTTTCTGA
AA sequence Show only first row Show all	>Lus10000138 pacid=23163410 polypeptide=Lus10000138 locus=Lus10000138.g ID=Lus10000138.BGIv1.0 annot-version=v1.0 MPETRGLCLSEEQTISTVRRPKSGGHRSMDMITEPYKLTRRCDVTAILILYGLPREDADGLIIYMLQGFQPLSQDIEEGICQVLAHMWLDSQLSFETSSS SAGSRNSSRPPFEKKLGAFFKHQIESDSSPVYGDGFRAGQQAIRKYGLQRTLEHIRMTGRFPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10000138 [exp]	0	1
AT3G57360			unknown protein		Lus10032322 [exp]	7.4	0.7046
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10005905 [exp]	8.5	0.7224
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Lus10020158 [exp]	11.0	0.7009
AT5G09225			unknown protein		Lus10020870 [exp]	17.5	0.7165
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10029336 [exp]	22.8	0.7002
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000830 [exp]	37.6	0.6902
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10017299 [exp]	44.5	0.6676
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10007685 [exp]	44.9	0.5768
AT4G38840			SAUR-like auxin-responsive pro...		Lus10032173 [exp]	45.0	0.6774
AT4G03090			sequence-specific DNA binding;...		Lus10024746 [exp]	51.3	0.6687

Compare expression of checked genes

Lus10000138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.