Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15430 58 / 8e-09 Plant calmodulin-binding protein-related (.1) AT5G39380 49 / 5e-06 Plant calmodulin-binding protein-related (.1) AT5G07820 46 / 5e-05 Plant calmodulin-binding protein-related (.1) AT5G61260 43 / 0.0005 Plant calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003472 [exp] 939 / 0 AT5G15430 58 / 2e-08 Plant calmodulin-binding protein-related (.1) Lus10000209 [exp] 790 / 0 AT5G15430 58 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10015733 [exp] 789 / 0 AT5G15430 58 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10021647 [exp] 162 / 6e-42 AT5G15430 95 / 5e-20 Plant calmodulin-binding protein-related (.1) Lus10034717 [exp] 117 / 5e-30 AT5G39380 86 / 1e-19 Plant calmodulin-binding protein-related (.1) Lus10030701 [exp] 62 / 6e-10 AT5G39380 132 / 6e-33 Plant calmodulin-binding protein-related (.1) Lus10034718 [exp] 45 / 0.0002 ND 47 / 4e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090200 [exp] 67 / 2e-11 AT5G39380 134 / 4e-33 Plant calmodulin-binding protein-related (.1) Potri.012G067100 [exp] 62 / 5e-10 AT5G07820 96 / 4e-21 Plant calmodulin-binding protein-related (.1) Potri.015G049600 [exp] 61 / 1e-09 AT5G39380 94 / 2e-20 Plant calmodulin-binding protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000141 pacid=23155430 polypeptide=Lus10000141 locus=Lus10000141.g ID=Lus10000141.BGIv1.0 annot-version=v1.0 ATGAAGATGTTCAATGATACCTTCTTTGGTAAAGAGCATCATGATGTGCTTTGGAACACGGCTGCAACTTTGATGGAGAGGAGGAAGAAGATGTCGTCTT CGAGTACTGTTGGAAGTTCCATAATTGATCCTCCTAAATTTCCTGCATCCAATAGAGACACCCTTCAAAAGGATAATTGTCGCTCGCCTTCTCGTTCCGA GATTGGCATTGCGACAAGTCTAAAGCATTACAAACATGTTTCATCTTCTGGTTCGATCAGATCAAGGGACAACATATCGCCTTTTACCAGGAGCAGGAAT CCAAGTTTGTTAAAAACAGGAACACCATCATCCTCATCTACTTCACAACTTGGTGTTCATAGTCACAAATCATCTCAAGATTCCAGAAGAAGATCTGTCT CAGTCTCGAAAGCAAGAACTTCACCTTCCGTTTCGAAACTTGACATTTCATCAACTTCAAGTAGTCTAAAGCCAAAAAAGTCCGAGACTTTAGTTTCTCC AGTACAAAGGAGATCAGGAATTAGCATGTCAAAGTTTGCACCTTCTTCTTCTTCTGTCAAAGACATTGAACGTTCACCAACACATCATCTATTGCAGAGA AGATCCATGTTGCCAAAAGAAGACCGAAAGGCGCGATCTTTATCGGTTGGGAGATCCATTACACAAAACAGAACAGAACAGAAAAGTTTCGGGGCAGGAA AGCTTGTTGAACATAATAAGAGTACTGTGTCTTCTTCTCCTGCAAAGCACAAGTTTTTGAGGAGGCAGACTGTATCAGAGCATGTAAACAGTTCAACAAA GAGGCCTACTACAAGATTATCCAGTGGAGGAACAGGCGTGGATACGAAATCAGTGTCACGCCTTAACATTGCGAACTATGAGAAGGAAGTCGTGAAAGCG AAAATTACTGCAGAGAAGTATTTACCTTTGCATTCTTCTGCATCCTCTAAGCATGAACCTCATAAAGTCACTCAATCAAGCTCACAAGCATCCACAATGA AGGTCCTGAAGCGTATGAAATGCGTTCAAGAGTACAGGAATTTACGAAGAACTAGAGCGAGATCTACGAAGTCTGAACCCATGGGAGTACGATCCAACGA TATGTATGGTGTGCACTCATCAACGGGGAGCTGCGAAACCGACCTTAATGTCCTCGAGCAAAACGCAATGGAGAGAATACTAGAGTCCAGGAGTAGTACT ACTGCGATTAGCACGACTAGGCGTACGAGTACAAGAAGCGGAGCACTAAGCAGTACTGGAGATCACAAGGAAAAGCAGCCAAGGAAATTGAAAGTTAGGC CAGGAAGAGTGATTGAGTTCAAGTATGAAATCACCAGTCCCAGGAGACTCAAGTTCAAGAGGACATCACCACCTAAACGACACGATAACACATCATCACT CGCCAAAGTCGACATAAAGTTTGAAGTGCTAAGGAATGCTGAGAGAAGACGAGAAAGTGGGGGGATTGAGCTTACAGAGGTTGATGCTATCGGGCAAGCG GGTTCGAGTCAACAAGACATAGATGAACAAAACATGTCAGAAGAAACAACAAATGAGTTGATTGTTGAGGATAGGAAGAGTAAAGTGAAGGCTCTGGTTG GTGCTTTTGAGTCGTTGATCTGTGTTCAAGATTCTAACACGGTTCCAACAGTATCTGAGTGA
AA sequence Show only first row Show all	>Lus10000141 pacid=23155430 polypeptide=Lus10000141 locus=Lus10000141.g ID=Lus10000141.BGIv1.0 annot-version=v1.0 MKMFNDTFFGKEHHDVLWNTAATLMERRKKMSSSSTVGSSIIDPPKFPASNRDTLQKDNCRSPSRSEIGIATSLKHYKHVSSSGSIRSRDNISPFTRSRN PSLLKTGTPSSSSTSQLGVHSHKSSQDSRRRSVSVSKARTSPSVSKLDISSTSSSLKPKKSETLVSPVQRRSGISMSKFAPSSSSVKDIERSPTHHLLQR RSMLPKEDRKARSLSVGRSITQNRTEQKSFGAGKLVEHNKSTVSSSPAKHKFLRRQTVSEHVNSSTKRPTTRLSSGGTGVDTKSVSRLNIANYEKEVVKA KITAEKYLPLHSSASSKHEPHKVTQSSSQASTMKVLKRMKCVQEYRNLRRTRARSTKSEPMGVRSNDMYGVHSSTGSCETDLNVLEQNAMERILESRSST TAISTTRRTSTRSGALSSTGDHKEKQPRKLKVRPGRVIEFKYEITSPRRLKFKRTSPPKRHDNTSSLAKVDIKFEVLRNAERRRESGGIELTEVDAIGQA GSSQQDIDEQNMSEETTNELIVEDRKSKVKALVGAFESLICVQDSNTVPTVSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	0	1
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	1.0	0.9963
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	2.8	0.9896
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	2.8	0.9926
					Lus10015828 [exp]	3.9	0.9899
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	4.9	0.9884
AT1G57790			F-box family protein (.1)		Lus10004476 [exp]	5.1	0.9709
					Lus10019410 [exp]	5.5	0.9770
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	5.5	0.9887
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	5.9	0.9868
AT2G03200			Eukaryotic aspartyl protease f...		Lus10022917 [exp]	6.3	0.9822

Compare expression of checked genes

Lus10000141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.