Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26935 141 / 3e-41 DHHC-type zinc finger family protein (.1) AT5G41060 134 / 1e-38 DHHC-type zinc finger family protein (.1.2) AT3G48760 94 / 1e-23 DHHC-type zinc finger family protein (.1) AT4G24630 91 / 9e-23 DHHC-type zinc finger family protein (.1) AT5G50020 71 / 2e-15 DHHC-type zinc finger family protein (.1.2) AT5G05070 59 / 4e-11 DHHC-type zinc finger family protein (.1) AT3G56930 55 / 6e-10 DHHC-type zinc finger family protein (.1.2) AT2G40990 52 / 7e-09 DHHC-type zinc finger family protein (.1) AT3G56920 47 / 3e-07 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032009 [exp] 183 / 2e-57 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 177 / 6e-55 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 96 / 3e-24 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 96 / 3e-24 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 85 / 2e-20 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10020844 [exp] 77 / 1e-17 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10028687 [exp] 74 / 2e-16 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 63 / 1e-12 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10030997 [exp] 61 / 7e-12 AT3G56930 332 / 1e-107 DHHC-type zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325400 [exp] 144 / 2e-42 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 142 / 1e-41 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 108 / 3e-29 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 107 / 1e-28 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 91 / 2e-22 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 89 / 8e-22 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 88 / 1e-21 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 75 / 7e-17 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.007G077000 [exp] 71 / 1e-15 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.006G027400 [exp] 65 / 2e-13 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000146 pacid=23175053 polypeptide=Lus10000146 locus=Lus10000146.g ID=Lus10000146.BGIv1.0 annot-version=v1.0 ATGTATGTAGTGCCGCCACCTCAGAGATCCGATCCAGGATCCGGTCAGACTGATTTGCTAGTTTACCAGTCATGGAAAGGCAGCAATATATTTTTCCTGG GTGGGAGGTTCATATTCGGTCCAGATGTGAGATCACTTGCGCTTACTATATTCCTGATCGTTGCGCCAGTTGCAGTTTTCTGCATTTTTGTTGCTCGAAA ACTAATGGATGACTTCCCAAACGACTGGGGCATATCAATAACAGTTGCTGCTGTTGTATTCACCATTTATGTGAGTTCTCTATCCTCTTTATCTGGGAAT GTGTTGTACACGTTTGAGATACATAGTACCTATAGTGTTTAA
AA sequence Show only first row Show all	>Lus10000146 pacid=23175053 polypeptide=Lus10000146 locus=Lus10000146.g ID=Lus10000146.BGIv1.0 annot-version=v1.0 MYVVPPPQRSDPGSGQTDLLVYQSWKGSNIFFLGGRFIFGPDVRSLALTIFLIVAPVAVFCIFVARKLMDDFPNDWGISITVAAVVFTIYVSSLSSLSGN VLYTFEIHSTYSV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26935			DHHC-type zinc finger family p...		Lus10000146 [exp]	0	1
AT5G17910			unknown protein		Lus10020367 [exp]	2.0	0.8996
					Lus10020368 [exp]	3.2	0.8789
AT4G39050			Kinesin motor family protein (...		Lus10017496 [exp]	4.5	0.8715
AT4G11450			Protein of unknown function (D...		Lus10035493 [exp]	6.7	0.8765
AT5G17910			unknown protein		Lus10009544 [exp]	8.4	0.8597
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10024555 [exp]	8.7	0.8357
AT3G21250		ATMRP6, ABCC8	ARABIDOPSIS THALIANA MULTIDRUG...		Lus10004896 [exp]	10.2	0.8583
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10026993 [exp]	11.0	0.8712
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038755 [exp]	13.0	0.8284
AT2G23140			RING/U-box superfamily protein...		Lus10022919 [exp]	13.5	0.8430

Compare expression of checked genes

Lus10000146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.