Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22980 383 / 6e-130 SCPL47 serine carboxypeptidase-like 47 (.1) AT3G10410 381 / 3e-129 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT3G45010 370 / 1e-124 SCPL48 serine carboxypeptidase-like 48 (.1) AT5G22960 187 / 8e-58 alpha/beta-Hydrolases superfamily protein (.1) AT3G25420 172 / 8e-49 SCPL21 serine carboxypeptidase-like 21 (.1) AT4G12910 168 / 3e-47 SCPL20 serine carboxypeptidase-like 20 (.1) AT5G23210 167 / 3e-47 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT5G08260 164 / 5e-46 SCPL35 serine carboxypeptidase-like 35 (.1) AT3G17180 161 / 8e-45 SCPL33 serine carboxypeptidase-like 33 (.1) AT1G61130 159 / 3e-44 SCPL32 serine carboxypeptidase-like 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037381 [exp] 612 / 0 AT3G10410 456 / 2e-158 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10041338 [exp] 612 / 0 AT3G45010 460 / 3e-160 serine carboxypeptidase-like 48 (.1) Lus10041339 [exp] 607 / 0 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10037958 [exp] 354 / 2e-118 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10038691 [exp] 334 / 2e-110 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10017466 [exp] 321 / 2e-105 AT3G10410 689 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10025859 [exp] 162 / 9e-45 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10021856 [exp] 155 / 1e-42 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10013395 [exp] 155 / 2e-42 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G215400 [exp] 384 / 2e-130 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.008G034800 [exp] 337 / 7e-112 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.010G227700 [exp] 334 / 1e-110 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.005G091800 [exp] 169 / 9e-48 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.010G149400 [exp] 166 / 2e-46 AT3G17180 564 / 0.0 serine carboxypeptidase-like 33 (.1) Potri.016G034400 [exp] 161 / 8e-45 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.007G072300 [exp] 161 / 1e-44 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.006G036000 [exp] 159 / 9e-44 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 157 / 3e-43 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.014G177500 [exp] 156 / 1e-42 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10000147 pacid=23152651 polypeptide=Lus10000147 locus=Lus10000147.g ID=Lus10000147.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCCTCTTCTTCTTCAGCAGCTCAACGCTTCCTCTGTTTATCGCTTGCTCTGTTTCTCTTCTCTTCGTTCTCCTCTGCCCTCAGATACCCAC CGTCTCCTTCTCAATTGGGATTGACTTCAACAACCGAAAAGATCTCACCAAAAGGCCAAGCAGAGAGGCTTATCCGCTCCTTCAATTTGTTCCCCAAACA CGACGCCAACATCGTCCTCAACGACCAGTCTGCCAAAGATGCTCCGGCAATCGTCGAGAGGCAATTCACTCTCAATGTCACTGCCGCCCCCGGCAGCACC CCTGGTCCTTCAATCCAGCAGTTCGGCCATTATGCCGGCTACTATTCTCTCCCCGACACCAAAGGTGCAAAGATGTTCTATTTCTTCTTTGAGTCAAGGC AGAACAAGACCGATGCTCCGGTGGTGATATGGCTGACAGGAGGACCAGGATGCGCAAGTGAATTGGCTTTGTTCTATGAAAACGGTCCTTTCCAGATTAC AGAGGATATGTCCCTTGTTTGGAATGACTATGGTTGGGACCAGGCTTCAAACATATTGTACGTTGACCAGCCCACCGGAACAGGGTTCAGTTACACGACC GACGATAGCGACATCCGACACGACGAAGTCGGAGTTAGTAACGACATGTACAACTTCCTTCAGGAATTCTTCAAAGGTCACCCCAAATATCAAAGCAATG ATTTCTTCATAACTGGAGAATCGTACGCCGGACATTACATTCCGGCTCTGGCTTCCAGGATTTACAAGGGAAACACCAACAAGGAAGGCCTTCACGTTAA CTTGAAGGGATTTGCGATCGGAAACGGGCTCACTGATCCTGCTTTCCAATACAAAGCGTACCCGGATTACGCTCTCTCTGAGAAACTGATTTCCAAGTCT GACCACGACTCCATCGTCAGCCAACTGGTTCCACCTTGCGAATCCGCCATTTCAGCTTGCGTACTACGACATTCGAAAGCAATGCGAGGGCTCGCTGTGC TACGATTTCTCGAGGATGGAGACATTCCTCAGCGACGACAAGGTCAAATCGGCACTAGGGGTGAAAGACATCGACTTCGTTTCTTGCAGCACTCAGGTGT ACGATGCGATGATGGGGGACTGGATGCACGACTACGAAGTCGGGATCCCGGCTTTGCTCGAGAGTGGGATCAAGGTGTTGATATACGCAGGAGAGTATGA
AA sequence Show only first row Show all	>Lus10000147 pacid=23152651 polypeptide=Lus10000147 locus=Lus10000147.g ID=Lus10000147.BGIv1.0 annot-version=v1.0 MSSSSSSSAAQRFLCLSLALFLFSSFSSALRYPPSPSQLGLTSTTEKISPKGQAERLIRSFNLFPKHDANIVLNDQSAKDAPAIVERQFTLNVTAAPGST PGPSIQQFGHYAGYYSLPDTKGAKMFYFFFESRQNKTDAPVVIWLTGGPGCASELALFYENGPFQITEDMSLVWNDYGWDQASNILYVDQPTGTGFSYTT DDSDIRHDEVGVSNDMYNFLQEFFKGHPKYQSNDFFITGESYAGHYIPALASRIYKGNTNKEGLHVNLKGFAIGNGLTDPAFQYKAYPDYALSEKLISKS DHDSIVSQLVPPCESAISACVLRHSKAMRGLAVLRFLEDGDIPQRRQGQIGTRGERHRLRFLQHSGVRCDDGGLDARLRSRDPGFAREWDQGVDIRRRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22980		SCPL47	serine carboxypeptidase-like 4...		Lus10000147 [exp]	0	1
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037381 [exp]	1.4	0.9955
AT3G13650			Disease resistance-responsive ...		Lus10039561 [exp]	1.4	0.9944
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041339 [exp]	2.4	0.9929
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041338 [exp]	2.8	0.9923
AT1G23460			Pectin lyase-like superfamily ...		Lus10030602 [exp]	4.6	0.9876
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	5.9	0.9906
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Lus10036361 [exp]	6.0	0.9887
AT1G70500			Pectin lyase-like superfamily ...		Lus10030888 [exp]	6.3	0.9830
AT3G62160			HXXXD-type acyl-transferase fa...		Lus10004527 [exp]	8.0	0.9875
AT4G18425			Protein of unknown function (D...		Lus10013969 [exp]	8.5	0.9858

Compare expression of checked genes

Lus10000147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.