Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54510 96 / 1e-22 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT5G28290 87 / 2e-19 ATNEK3 NIMA-related kinase 3 (.1) AT3G63280 82 / 7e-18 ATNEK4 NIMA-related kinase 4 (.1.2) AT3G04810 75 / 2e-15 ATNEK2 NIMA-related kinase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009186 [exp] 453 / 1e-158 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10015928 [exp] 408 / 3e-141 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10001783 [exp] 162 / 2e-46 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10020244 [exp] 161 / 4e-46 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10042632 [exp] 59 / 4e-10 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G039000 [exp] 207 / 2e-63 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.005G051600 [exp] 206 / 9e-63 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.002G049400 [exp] 139 / 4e-38 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000148 pacid=23158764 polypeptide=Lus10000148 locus=Lus10000148.g ID=Lus10000148.BGIv1.0 annot-version=v1.0 ATGGCTCCAAGCACCTACTCAGAGAAGAAACGGCATTCGTTCTGCAATAGGATGCTAAATCCAAGCATATCTGCCACAGAACAAGACTCTATCTGCTCCA CCATAGCGATGCATCAGGATACACCCAGTTACGTAAACCGCAGGATGTCCGACATCTCTCTCGGTAGCAGTCGTGCAACTGTGATCTGTAAGTCCATCAC TTCGAAACCTTCAAATATCACCACAACTCGGAAAGTTGCTGCTTCCAGAGCTTCTCCTGTTCCTAAGAGACAGCCAGACCCTGTGAGAAAGCGCGAATCT TTTCCTGCGGCTTCCACCCAGACCAAAAGGTCTGTTATTACAAGCCGAAGAGCATCTCTTCCTATAGCGACGAAAGCTACAAGACAAAATCCTGCTTGCC GTCCCAGTGTTGGCATCCTCCAGAGCTTGAAGTCCCCTGACGTCTCTGTCAATGCTCCTCGAATTGACAGGATAGCTGAATTCCCGTTAGCTTCATATGA AGAGACATTCTTCCCAGTCCACAGAACTTCACCAACTTTGGCACAAGGATCCTCAGTTTCGCCTCGACATGCAGACTGCTCGATCACCAAGGACAAATGC ACTATTCAGACATGCGACACAAACTACTCTGCCAAGCCGTTAGGTGGTGTTGCGGATGTATGGCAAGCATATTCAAGCAAGTAG
AA sequence Show only first row Show all	>Lus10000148 pacid=23158764 polypeptide=Lus10000148 locus=Lus10000148.g ID=Lus10000148.BGIv1.0 annot-version=v1.0 MAPSTYSEKKRHSFCNRMLNPSISATEQDSICSTIAMHQDTPSYVNRRMSDISLGSSRATVICKSITSKPSNITTTRKVAASRASPVPKRQPDPVRKRES FPAASTQTKRSVITSRRASLPIATKATRQNPACRPSVGILQSLKSPDVSVNAPRIDRIAEFPLASYEETFFPVHRTSPTLAQGSSVSPRHADCSITKDKC TIQTCDTNYSAKPLGGVADVWQAYSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10000148 [exp]	0	1
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10009186 [exp]	1.0	0.9902
AT5G50740			Heavy metal transport/detoxifi...		Lus10030514 [exp]	5.8	0.9443
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	6.0	0.9393
AT2G34060			Peroxidase superfamily protein...		Lus10005278 [exp]	6.9	0.9241
AT2G25970			KH domain-containing protein (...		Lus10013531 [exp]	8.1	0.9197
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Lus10009030 [exp]	8.5	0.9194
AT1G73380			unknown protein		Lus10031316 [exp]	10.1	0.9155
AT5G45590			Ribosomal protein L35 (.1)		Lus10012140 [exp]	10.1	0.9283
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10030339 [exp]	10.2	0.9243
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	11.0	0.9389

Compare expression of checked genes

Lus10000148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.