Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41390 66 / 1e-13 PLAC8 family protein (.1.2) AT4G23470 62 / 1e-12 PLAC8 family protein (.1.2.3) AT1G63830 62 / 3e-12 PLAC8 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036377 [exp] 120 / 1e-32 AT3G09740 347 / 8e-117 syntaxin of plants 71 (.1) Lus10018826 [exp] 111 / 1e-30 AT4G23470 328 / 2e-113 PLAC8 family protein (.1.2.3) Lus10014759 [exp] 96 / 1e-23 AT3G09740 308 / 4e-102 syntaxin of plants 71 (.1) Lus10017509 [exp] 65 / 3e-13 AT1G63830 379 / 1e-134 PLAC8 family protein (.1.2.3) Lus10028774 [exp] 56 / 5e-10 AT1G63830 350 / 1e-122 PLAC8 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087600 [exp] 77 / 8e-18 AT5G41390 327 / 8e-114 PLAC8 family protein (.1.2) Potri.003G130700 [exp] 65 / 3e-13 AT1G63830 341 / 1e-119 PLAC8 family protein (.1.2.3) Potri.001G101100 [exp] 62 / 2e-12 AT1G63830 353 / 2e-124 PLAC8 family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000149 pacid=23180231 polypeptide=Lus10000149 locus=Lus10000149.g ID=Lus10000149.BGIv1.0 annot-version=v1.0 ATGAATTATTCCTCCGAGAAGGCGGCGCAAATGCATTTGCGCCAGAACTACAGGAATCTCTGGCGCACCGATCTCCCTGTACTCGACCATGCGCTTCCTA CATTCTGCGCAAGCGAGCTCTTTATAATCACTTGTCAAGGTACACTTGCGGTGCTGGCTACATGCCTTGCAGTGGCATATGCGGAGAAAGCAATTGCCCT CAATTTTGTCTTTGCACCGAGTCCTGGTGTTGCTTCGCTAATTCGGTTGCCTCAACACGCTTCCAGACTTCACCCTGGGTTCATGCTGTGCCTGCAGCAG TTGGCCTGTATCTGCTCCTGTGTTGCATGCATAACTGGAATCGACGAAGTAGGAGAGATTCCTCACCTCTTGACTTGCTTGTCTGATATCGTCTATTGCT CGAAAGAATGGTCCTAA
AA sequence Show only first row Show all	>Lus10000149 pacid=23180231 polypeptide=Lus10000149 locus=Lus10000149.g ID=Lus10000149.BGIv1.0 annot-version=v1.0 MNYSSEKAAQMHLRQNYRNLWRTDLPVLDHALPTFCASELFIITCQGTLAVLATCLAVAYAEKAIALNFVFAPSPGVASLIRLPQHASRLHPGFMLCLQQ LACICSCVACITGIDEVGEIPHLLTCLSDIVYCSKEWS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41390			PLAC8 family protein (.1.2)		Lus10000149 [exp]	0	1
AT1G63060			unknown protein		Lus10000001 [exp]	12.2
AT5G26150			protein kinase family protein ...		Lus10000068 [exp]	100.3
AT5G35110			unknown protein		Lus10000078 [exp]	107.4
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Lus10000082 [exp]	110.2
AT2G46490			unknown protein		Lus10000088 [exp]	114.1
AT4G09160			SEC14 cytosolic factor family ...		Lus10000102 [exp]	122.9
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10000107 [exp]	125.8
					Lus10000109 [exp]	127.0
AT3G07565			Protein of unknown function (D...		Lus10000123 [exp]	134.9
					Lus10000134 [exp]	140.8

Compare expression of checked genes

Lus10000149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.