Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53390 421 / 3e-146 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37160 419 / 8e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G52820 52 / 1e-07 WD-40 repeat family protein / notchless protein, putative (.1) AT2G43770 50 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 49 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 48 / 4e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 47 / 1e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 45 / 3e-05 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G47410 45 / 4e-05 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) AT2G41500 44 / 5e-05 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026500 [exp] 481 / 6e-170 AT3G53390 785 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10019930 [exp] 476 / 1e-167 AT3G53390 794 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 57 / 5e-09 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10029493 [exp] 54 / 3e-08 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10026837 [exp] 53 / 1e-07 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020214 [exp] 53 / 1e-07 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039636 [exp] 50 / 5e-07 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 50 / 1e-06 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 50 / 2e-06 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G088800 [exp] 434 / 3e-151 AT3G53390 813 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G129100 [exp] 426 / 3e-148 AT2G37160 811 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.009G058000 [exp] 56 / 7e-09 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.006G045800 [exp] 53 / 9e-08 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.T125206 [exp] 52 / 2e-07 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G197900 [exp] 52 / 3e-07 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G148500 [exp] 50 / 4e-07 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G026800 [exp] 51 / 5e-07 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.019G096900 [exp] 50 / 7e-07 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G111800 [exp] 49 / 1e-06 AT2G01470 346 / 7e-117 SEC12P-like 2 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10000150 pacid=23166688 polypeptide=Lus10000150 locus=Lus10000150.g ID=Lus10000150.BGIv1.0 annot-version=v1.0 ATGCAGAGTAACCCTATTGCCCGATGGCACATTTGCCAAGGTTCAATTAATAGTATTACTTTCTCCGCTGACGGGACCTACTTAGCAACTGTTGGACGAG ATGGATACCTTAGGGTTTTTGACTACACAAAGGAGCAACTTATTTGTGGTGGAAAGAGTTATTATGGAGCTCTACTATGCTGTGCTTGGAGCATGGATGG GAAATACGTTTTGACTGGTGGCGAAGATGATCTCGTTCAAGTTTGGAGTATGGAAGACCGGAAAGTTGTCGCATGGGGTGAAGGACATAACTCGTGGGTG AGCGGAGTGGCGTTTGATTCATACTTTTCATCACCAAATGCAGATGGTACCACAGAGACAGTAATATACCGGTTTGGTTCTGTTGGTCAGGATACGCAGT TGCTGCTGTGGGACTTGGAAATGGACGAAATCGTGGTGCCACTACGTCGAGCCCCCGGTGGGTCTCCGACTTTTAGTGCCGGCAGCCAATCATCCCACTG GGACAATGTGATCCCAGTAGGCACACTGCAACCTGCTCCGTGCACTCGGCACGTTCCGAAACTCTCCCCCCTAGTCGTTCATCGCGTTCACACTGAGCCC CTTTCCGGGTTAATCTTCACTCAAGAATCCGTCGTTACAGCTTGTCGAGAAGGCCACATCAAAGTATGGACGAGACCTGGAGCTGTAGATACCCAGACTA CTACGACGAACAACTCCGAGACTGTTCTGAGTGGTAGCTTGAAAGAGAAACCTTTGTTATCAAGCAAGAGTGGCACTGCTGGTTACAGGCAATGA
AA sequence Show only first row Show all	>Lus10000150 pacid=23166688 polypeptide=Lus10000150 locus=Lus10000150.g ID=Lus10000150.BGIv1.0 annot-version=v1.0 MQSNPIARWHICQGSINSITFSADGTYLATVGRDGYLRVFDYTKEQLICGGKSYYGALLCCAWSMDGKYVLTGGEDDLVQVWSMEDRKVVAWGEGHNSWV SGVAFDSYFSSPNADGTTETVIYRFGSVGQDTQLLLWDLEMDEIVVPLRRAPGGSPTFSAGSQSSHWDNVIPVGTLQPAPCTRHVPKLSPLVVHRVHTEP LSGLIFTQESVVTACREGHIKVWTRPGAVDTQTTTTNNSETVLSGSLKEKPLLSSKSGTAGYRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53390			Transducin/WD40 repeat-like su...		Lus10000150 [exp]	0	1
AT1G12440			A20/AN1-like zinc finger famil...		Lus10006671 [exp]	2.8	0.7781
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Lus10014963 [exp]	5.3	0.7288
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10043076 [exp]	5.8	0.7574
AT5G09310			unknown protein		Lus10041297 [exp]	8.9	0.7018
AT1G12440			A20/AN1-like zinc finger famil...		Lus10007015 [exp]	9.2	0.7524
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10037607 [exp]	12.8	0.7191
AT1G28280			VQ motif-containing protein (....		Lus10015315 [exp]	19.5	0.6977
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10041182 [exp]	21.7	0.7051
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10000850 [exp]	26.3	0.6232
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10015464 [exp]	30.1	0.7082

Compare expression of checked genes

Lus10000150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.