Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46220 176 / 2e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004920 [exp] 271 / 2e-87 AT3G46220 963 / 0.0 unknown protein Lus10040874 [exp] 259 / 1e-82 AT3G46220 980 / 0.0 unknown protein Lus10000127 [exp] 148 / 1e-46 AT3G46220 126 / 1e-34 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234300 [exp] 198 / 3e-60 AT3G46220 978 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000152 pacid=23180207 polypeptide=Lus10000152 locus=Lus10000152.g ID=Lus10000152.BGIv1.0 annot-version=v1.0 ATGTCATCTTGCAGTGGGTTATACTTGAAACAACTTGACAAGAAGTTGGAGAGAACGATTCTCCATTCTTATCGCAAGGATTTGACAGCTCAAGTGTCTG CAGAAAGTGATCCAGTTGCACTTCTTCCTAAAGTTGTGTCCCTTCTTTATATTCAGATCCACAATAAAGCTCTCCAGGCTTCTGGACGTGCCATTTCTAT TGCAGTTTCTCGATTGAAGGATAAATTGGATGGTCCAGCGTACAAGATTCTCACGGATTACCAAACTGCAACCGTTAAACTCTTGGCTCTTTCATCTGCT GCAACTGGTGATGAAGAAGACTGTACATCGGATAGAATCTTGAGCAAAAGGGAGCTTCTTGAGAGCCTGATGCCTCAGTTGAAGGGCCTTGTTCTGAGTC CTTCATCCTCGCAGACACAATCCTAA
AA sequence Show only first row Show all	>Lus10000152 pacid=23180207 polypeptide=Lus10000152 locus=Lus10000152.g ID=Lus10000152.BGIv1.0 annot-version=v1.0 MSSCSGLYLKQLDKKLERTILHSYRKDLTAQVSAESDPVALLPKVVSLLYIQIHNKALQASGRAISIAVSRLKDKLDGPAYKILTDYQTATVKLLALSSA ATGDEEDCTSDRILSKRELLESLMPQLKGLVLSPSSSQTQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46220			unknown protein		Lus10000152 [exp]	0	1
AT2G27770			Plant protein of unknown funct...		Lus10014372 [exp]	15.1	0.8945
AT4G16850			unknown protein		Lus10019980 [exp]	38.0	0.8778
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10031349 [exp]	43.1	0.8834
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Lus10017737 [exp]	56.6	0.8802
AT2G46960		CYP709B1	"cytochrome P450, family 709, ...		Lus10034134 [exp]	65.9	0.8772
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10009187 [exp]	190.3	0.8408
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10012767 [exp]	194.9	0.8427
AT3G51100			unknown protein		Lus10041813 [exp]	208.9	0.8353
AT1G24880		AtLpxC2	lipid X C2, UDP-3-O-acyl N-ace...		Lus10001592 [exp]	210.4	0.8475
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10012566 [exp]	215.5	0.8386

Compare expression of checked genes

Lus10000152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.