Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 132 / 4e-35 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72890 126 / 5e-34 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT1G27180 125 / 1e-32 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G72950 118 / 3e-31 Disease resistance protein (TIR-NBS class) (.1) AT1G72930 112 / 4e-31 TIR toll/interleukin-1 receptor-like (.1.2) AT1G27170 119 / 2e-30 transmembrane receptors;ATP binding (.1.2) AT1G72910 115 / 4e-30 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G17615 114 / 1e-29 Disease resistance protein (TIR-NBS class) (.1) AT1G72900 112 / 5e-29 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72920 109 / 7e-29 Toll-Interleukin-Resistance (TIR) domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002247 [exp] 387 / 3e-129 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002249 [exp] 375 / 2e-123 AT5G36930 286 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 332 / 4e-105 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004719 [exp] 323 / 1e-102 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004727 [exp] 271 / 2e-90 AT1G27180 182 / 2e-53 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10008526 [exp] 287 / 6e-90 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000331 [exp] 280 / 9e-88 AT5G36930 217 / 1e-57 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007790 [exp] 280 / 3e-87 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 245 / 2e-74 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002568 [exp] 165 / 4e-48 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 164 / 2e-47 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 166 / 7e-47 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143100 [exp] 157 / 7e-47 AT5G36930 234 / 1e-69 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 162 / 2e-46 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 163 / 4e-46 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 162 / 1e-45 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 162 / 1e-45 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 160 / 5e-45 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002428 [exp] 157 / 5e-45 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10000153 pacid=23149884 polypeptide=Lus10000153 locus=Lus10000153.g ID=Lus10000153.BGIv1.0 annot-version=v1.0 ATGAGTTATTTGAGAGATGTTGCTACTGTGCTTGCCTTGCTTCTCCCACTCATTCTTCTCTACAAGTTTTGGAGACTAAATTCCAAACACTCAATCGTCA ACGATGACGACGATTCAACATCTGAAGTTGATACCATACCCGACTCCACAAATCCCTCTGGCTCGTTTCCCTCCGTGGAGTATGAGGTGTTTTTGAGTTT CAGGGGTCCAGATACTCGTTATCAAATCACCGACATCCTCTATCGTTTTCTTTGTCGCACAAAGATTCACACGTTTAGAGACGATGATGAGCTTCGTAAG GGAGAAGAGATAAAGGCCACCCTCCTCAGAGCAATCAACCAGTCGAAAATTTATGTCCCGATCATATCACGAGGTTACGCCGATAGTAAATGGTGTCTTA TGGAGCTTGCTGAAATCGTTCGACATCAAAAGCTGGACACTCGACGGATTATACTTCCTATTTTTTATATGGTGAATCCAAAAGATGTGCGACATCAGAC TGGACCTTATCGAAAGGCATTTCAAGAACACACGACTAAATATGATGCAATCACCATACAGAACTGGAAAGATGCTCTGAATAAGGTTGGAACTTTAAAA GGATGGCACGTCAAAAACAATGACGAGTACGTAATCCTCACCCTCAGCCTTTTATTATTCACTATCGTATATACTTGCTTATTGACTAAGTTTCACAATT GA
AA sequence Show only first row Show all	>Lus10000153 pacid=23149884 polypeptide=Lus10000153 locus=Lus10000153.g ID=Lus10000153.BGIv1.0 annot-version=v1.0 MSYLRDVATVLALLLPLILLYKFWRLNSKHSIVNDDDDSTSEVDTIPDSTNPSGSFPSVEYEVFLSFRGPDTRYQITDILYRFLCRTKIHTFRDDDELRK GEEIKATLLRAINQSKIYVPIISRGYADSKWCLMELAEIVRHQKLDTRRIILPIFYMVNPKDVRHQTGPYRKAFQEHTTKYDAITIQNWKDALNKVGTLK GWHVKNNDEYVILTLSLLLFTIVYTCLLTKFHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10000153 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10002247 [exp]	1.0	0.9710
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10011405 [exp]	7.3	0.8947
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10023882 [exp]	13.6	0.8506
AT5G58880			unknown protein		Lus10005869 [exp]	16.6	0.8630
					Lus10007776 [exp]	18.0	0.8606
AT5G65030			unknown protein		Lus10026048 [exp]	19.7	0.8908
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10024358 [exp]	22.4	0.8821
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10035453 [exp]	25.0	0.8541
AT2G28080			UDP-Glycosyltransferase superf...		Lus10016126 [exp]	29.1	0.8663
AT5G23750			Remorin family protein (.1.2)		Lus10001477 [exp]	35.1	0.8770

Compare expression of checked genes

Lus10000153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.