Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22900 199 / 2e-57 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44900 197 / 2e-56 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT2G28180 173 / 7e-48 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT1G08140 167 / 5e-46 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT3G44920 166 / 2e-45 ATCHX11 cation/H+ exchanger 11, cation/H+ exchanger 11 (.1) AT1G08135 164 / 9e-45 ATCHX6B, CHX6B cation/H+ exchanger 6B, cation/H+ exchanger 6B (.1) AT2G13620 164 / 1e-44 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT3G44930 157 / 1e-42 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT1G05580 150 / 3e-40 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT5G22910 145 / 3e-38 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040961 [exp] 652 / 0 AT5G22900 271 / 7e-83 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10000161 [exp] 601 / 0 AT5G22900 320 / 6e-99 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10013423 [exp] 366 / 3e-120 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10040963 [exp] 365 / 2e-119 AT3G44900 376 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10030013 [exp] 165 / 5e-45 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 163 / 2e-44 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10043128 [exp] 162 / 5e-44 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 158 / 9e-43 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10017540 [exp] 146 / 1e-38 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G182900 [exp] 348 / 4e-114 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G099000 [exp] 343 / 8e-112 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.010G171200 [exp] 330 / 5e-107 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123800 [exp] 180 / 8e-51 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G183000 [exp] 179 / 3e-50 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098300 [exp] 171 / 1e-47 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.006G176400 [exp] 169 / 8e-47 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.006G176800 [exp] 166 / 5e-46 AT5G22900 371 / 1e-117 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.018G098600 [exp] 166 / 8e-46 AT3G44900 388 / 6e-123 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.019G123700 [exp] 166 / 1e-45 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000154 pacid=23169899 polypeptide=Lus10000154 locus=Lus10000154.g ID=Lus10000154.BGIv1.0 annot-version=v1.0 ATGATTACTCCAAACTTCTTCCCTTTAGGATTTACCTTGCTTGGTTATTTCTTGAAGTTGACCTTCACGTTCTTAATGGGACTCAGTTTTAAGCTATCTG CTAAATATTGTGCAGCTTACACACTCATTGTCAATGCTAAAGGTGTTCTTGAAGTTGGCGTCTTCCTCAGCTTTGGTAACCTTGCGAAGAGACAATTGGA GACTACCTATGCTATTTTCTTGGTGTTTTTTCTGTCAAGTATTGCCCCACCAATCATAAGGCTTCTCTACGATCCTACAAAACAGTACATTGGTTACAAG AGGAAGTGCATTCAGTATGCTCCTGACAATGCTCCTCTCCACATCTTGGCTTGTGCACACAAACAGGATGATGCAGTAGCAGTCCTCAAGCTGCTGGAGT TTTCGAATCCCACTAAACAAAGTCCCTTAGTAGTATTGGGGCTATGCTTGGAAGAGCTTGTAAGCAGCTTCACCCCTCTTCTAATCAACCATCAATTAGG GCAGAAAGTTTCTTCCTCCAAAGGATCAAAATCGCAGCACATCCTCGACGTATTCAACTACTTCGCGCCGCAGTTCAAAAAACTGGCACAGGTCAACGCC TTCACCGCAATCTCCCACCTCAAACAAATGCATGAGGACATCTGCTGGCTCGCATTCAACAAGGCTGTTCCGTTGATCGTGCTTCCGTTTCATAACAAGT GGAACCACAAAGGCCAACTGATTCATAGCACTGAAGACCTCAGGAGCTTGAACATCAATGTCTTGAATAGGGCTCCTTGCTCCGTTGGGATCTTGGTCGA TCGCCGGAGGGCTCTCGGACTTTCATCCATCTTCGTGACTTCGGCAGTTTATCGTGTGATCCTTTTGTTCGTGGGAGGGTCCGATGACCGGGAGGCGCTG GCATTTGCATTGAGGATGGCTGGTAGTCCCAGGGTACAGCTGACTATAGTTCAGTTCATGGTGGGTGAGGAGAATGTAGTGGATCGTTGGGAGGCGATGC TTGATGCAGAGGCGATCAGAATCATGAGGCAAGAGGTTTTGTGGAAAAACACGTAA
AA sequence Show only first row Show all	>Lus10000154 pacid=23169899 polypeptide=Lus10000154 locus=Lus10000154.g ID=Lus10000154.BGIv1.0 annot-version=v1.0 MITPNFFPLGFTLLGYFLKLTFTFLMGLSFKLSAKYCAAYTLIVNAKGVLEVGVFLSFGNLAKRQLETTYAIFLVFFLSSIAPPIIRLLYDPTKQYIGYK RKCIQYAPDNAPLHILACAHKQDDAVAVLKLLEFSNPTKQSPLVVLGLCLEELVSSFTPLLINHQLGQKVSSSKGSKSQHILDVFNYFAPQFKKLAQVNA FTAISHLKQMHEDICWLAFNKAVPLIVLPFHNKWNHKGQLIHSTEDLRSLNINVLNRAPCSVGILVDRRRALGLSSIFVTSAVYRVILLFVGGSDDREAL AFALRMAGSPRVQLTIVQFMVGEENVVDRWEAMLDAEAIRIMRQEVLWKNT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10000154 [exp]	0	1
AT2G35615			Eukaryotic aspartyl protease f...		Lus10037254 [exp]	2.2	0.7790
AT1G61550			S-locus lectin protein kinase ...		Lus10037730 [exp]	3.5	0.8183
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10004214 [exp]	4.2	0.8100
AT2G15220			Plant basic secretory protein ...		Lus10014111 [exp]	4.6	0.7719
AT1G27180			disease resistance protein (TI...		Lus10008519 [exp]	6.2	0.7890
AT4G08250	GRAS		GRAS family transcription fact...		Lus10022664 [exp]	8.7	0.7808
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10006342 [exp]	10.4	0.7699
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10001208 [exp]	19.3	0.7576
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10037286 [exp]	25.3	0.7375
					Lus10008155 [exp]	25.3	0.7707

Compare expression of checked genes

Lus10000154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.