Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64630 147 / 7e-43 MUB3.9, NFB1, NFB01, MUB3, FAS2 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033489 [exp] 299 / 2e-101 AT5G64630 612 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10020888 [exp] 148 / 8e-42 AT5G64630 563 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10020585 [exp] 40 / 0.0003 AT3G44530 1395 / 0.0 homolog of histone chaperone HIRA (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G108200 [exp] 174 / 5e-53 AT5G64630 667 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000155 pacid=23181305 polypeptide=Lus10000155 locus=Lus10000155.g ID=Lus10000155.BGIv1.0 annot-version=v1.0 ATGATGACCAAAAAGGCTGATTATCCAATCTTGAACTATGCAGATGGGCTCTTCAAACTTCCTTACCGCCTGATTTTCGCGGTAGCTACTCTAAATTCGG TGTACATATACGATACCGAAAGTGTTCCTCCGATAGCAGTTCTTGCGGGGCTTCACTATGCTGCAATCACAGACATTGCATGGTCAGCTAATGGAGAGCT CTTAGCAGTGTCGTCTCAAGACGGCTACTGCACCTTAGTCGAATTCCAAAGCAACGAACTGGGTTCGCCTCTTGTCGCTCAAGGTTGGGGAACGAAGAAC AGCATGCCTCAGAGTGATAAGAAACCCGAGGAAGACGGAGAAGCAATGGACATCAGTGGCGGTTCTTCTACAAACGCAGAAGGTAAAAAGATCAGTGTGG AAGAGAAGAGTACATCTCCAGTTGCGGTGTCTGCAACTCCTGCGAATCCTAACAAGCCAGCAAGGAAGAGAATTACTCCTATGGCGATTGATCCGTAG
AA sequence Show only first row Show all	>Lus10000155 pacid=23181305 polypeptide=Lus10000155 locus=Lus10000155.g ID=Lus10000155.BGIv1.0 annot-version=v1.0 MMTKKADYPILNYADGLFKLPYRLIFAVATLNSVYIYDTESVPPIAVLAGLHYAAITDIAWSANGELLAVSSQDGYCTLVEFQSNELGSPLVAQGWGTKN SMPQSDKKPEEDGEAMDISGGSSTNAEGKKISVEEKSTSPVAVSATPANPNKPARKRITPMAIDP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10000155 [exp]	0	1
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10003268 [exp]	6.7	0.8451
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10030284 [exp]	21.6	0.7264
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	22.3	0.8071
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10024838 [exp]	25.7	0.8003
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10000790 [exp]	27.6	0.7522
AT4G10650			P-loop containing nucleoside t...		Lus10014654 [exp]	34.2	0.6642
AT1G20720			RAD3-like DNA-binding helicase...		Lus10016027 [exp]	35.7	0.7818
AT4G15620			Uncharacterised protein family...		Lus10031998 [exp]	35.8	0.7566
AT5G54010			UDP-Glycosyltransferase superf...		Lus10003154 [exp]	39.0	0.6941
					Lus10030985 [exp]	40.2	0.7105

Compare expression of checked genes

Lus10000155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.