Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25570 457 / 5e-161 Adenosylmethionine decarboxylase family protein (.1.2) AT3G02470 427 / 1e-148 SAMDC S-adenosylmethionine decarboxylase (.1.3.4) AT5G15950 426 / 3e-148 Adenosylmethionine decarboxylase family protein (.1.2) AT5G18930 252 / 2e-80 BUD2, SAMDC4 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) AT3G25572 56 / 2e-10 CPuORF11 conserved peptide upstream open reading frame 11 (.1) AT3G02468 56 / 2e-10 CPuORF9 conserved peptide upstream open reading frame 9 (.1) AT5G15948 52 / 6e-09 CPuORF10 conserved peptide upstream open reading frame 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034412 [exp] 818 / 0 AT3G25570 481 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2) Lus10019146 [exp] 780 / 0 AT3G25570 478 / 3e-169 Adenosylmethionine decarboxylase family protein (.1.2) Lus10035083 [exp] 611 / 0 AT3G25570 473 / 2e-168 Adenosylmethionine decarboxylase family protein (.1.2) Lus10031919 [exp] 607 / 0 AT3G25570 470 / 4e-167 Adenosylmethionine decarboxylase family protein (.1.2) Lus10040973 [exp] 360 / 3e-122 AT3G25570 372 / 9e-128 Adenosylmethionine decarboxylase family protein (.1.2) Lus10021951 [exp] 237 / 1e-74 AT5G18930 361 / 3e-124 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Lus10041241 [exp] 233 / 4e-73 AT5G18930 363 / 2e-125 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Lus10035082 [exp] 60 / 1e-11 AT5G15948 72 / 3e-19 conserved peptide upstream open reading frame 10 (.1) Lus10031918 [exp] 60 / 1e-11 AT5G15948 72 / 3e-19 conserved peptide upstream open reading frame 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G133900 [exp] 530 / 0 AT3G25570 478 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2) Potri.017G108800 [exp] 477 / 1e-168 AT3G02470 481 / 3e-171 S-adenosylmethionine decarboxylase (.1.3.4) Potri.004G106800 [exp] 463 / 5e-163 AT3G02470 478 / 3e-170 S-adenosylmethionine decarboxylase (.1.3.4) Potri.018G101500 [exp] 332 / 6e-111 AT3G02470 358 / 2e-122 S-adenosylmethionine decarboxylase (.1.3.4) Potri.008G198800 [exp] 246 / 5e-78 AT5G18930 461 / 1e-163 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Potri.010G028500 [exp] 240 / 6e-76 AT5G18930 451 / 7e-160 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Potri.018G101400 [exp] 60 / 8e-12 AT3G02468 61 / 1e-14 conserved peptide upstream open reading frame 9 (.1) Potri.010G133850 [exp] 60 / 1e-11 AT3G02468 70 / 3e-18 conserved peptide upstream open reading frame 9 (.1) Potri.004G106750 [exp] 57 / 9e-11 AT3G02468 64 / 6e-16 conserved peptide upstream open reading frame 9 (.1) Potri.017G108901 [exp] 58 / 2e-10 AT5G15948 67 / 3e-16 conserved peptide upstream open reading frame 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01536 [flax] [poplar] SAM_decarbox Adenosylmethionine decarboxylase PF08132 [flax] [poplar] AdoMetDC_leader S-adenosyl-l-methionine decarboxylase leader peptide
Representative CDS sequence Show only first row Show all	>Lus10000156 pacid=23161050 polypeptide=Lus10000156 locus=Lus10000156.g ID=Lus10000156.BGIv1.0 annot-version=v1.0 ATGGAGTCCAAAGGTGGCAAGAAGAAGTCTAGCAGTAGTAAATCCGTCTACGAAGCCCCCCTCGGCTACAGCATTGAAGACGTTCGCCCAAACGGTGGAA TCGAGAAGTTCAGATCTGCTGCATACTCCAACTTTCGGTCAACCTCTTCTCTCCCTCCCTCTCTCTGCAACTTCAATCATCTTATAACTTGTGAGCTTTC TGGAATCTTCTACAATCTCTTGCTGGTGTTTACGATGGCAGTCTCTGCAATTGGGTTTGAGGGATTTGAGAAGAGGCTAGAAATATCTTTCTCTGAGCCT GGTGTGTTTGCTGATCCTGAAGGAAAGGGCCTCCGATCTCTTTCTAAGGCTCAGTTAGATGAGATTCTTGGACCGGCTGAGTGCACTATTGTCGACTCAC TTGCAAATGAGCATGTGGACTCCTATGTCCTCTCCGAATCTAGCCTCTTTGTGTACTCTTACAAGATCATCATCAAGACATGTGGGACGACTAAGCTGCT CTTGTCGATTCCACCTATCCTGAAGTTGGCAGACTCCCTGTCACTGAAGGTGAAGTCAGTGAGGTATTCTCGTGGGAGCTTTATCTGTCCCTCAGCACAA ATATATCCCCATCGCAGCTTCTCTGAGGAAGTTTGTGTACTTGATGGCTATTTTGCCAAGCTTGGTTCTGGCAGCAAGGCATATGTCATGGGCGGATGGG ATGAACAGCAAAAATGGCATGTTTACTCTGCATCTGCGGACTCTGGTCTGATTGATGAACCTATTTACACTGTGGAGATGTGCATGACTGGTCTGGACAG AGAAAAAGCTGCAGTGTTCTTCAAAACCCAGTCTCCTTCTGGAGCTGTGATGACCATTGATTCTGGCATAAGGAAGATTCTTCCAGACTCTGAGATCTGT GATTTTGATTTTGACCCTTGTGGTTATTCGATGAATGCTATTGAAGGTGATGCTGTATCGACCATCCACGTGACTCCAGAAGATGGGTTTAGCTATGCAA GCTTTGAAATGATGGGATATAACCCCCAGGAAGTGGACCTCAACGGAGTGGTGAAAAGGGTGCTGGCTTGCTTCAAACCCAGTGAGTTCTCTGTAGCTGT GCATGCAAATGTTGCTGGGAAGCAAATGGAGCTGGCATGTCTCCTGGATGTAAAGGGATATTGTCGCGGAGAGAGGAGCCTTGAGGAGCTTGGAATGGGT GGCTCTATTGTCTATCAGAAGTTTGAACTGTCTGGGGAGAGTGAATCTCCCAGATCAACTCTGAAGTGCTGTTTTAAAGAGGAAAATGAGGAATTTTAA
AA sequence Show only first row Show all	>Lus10000156 pacid=23161050 polypeptide=Lus10000156 locus=Lus10000156.g ID=Lus10000156.BGIv1.0 annot-version=v1.0 MESKGGKKKSSSSKSVYEAPLGYSIEDVRPNGGIEKFRSAAYSNFRSTSSLPPSLCNFNHLITCELSGIFYNLLLVFTMAVSAIGFEGFEKRLEISFSEP GVFADPEGKGLRSLSKAQLDEILGPAECTIVDSLANEHVDSYVLSESSLFVYSYKIIIKTCGTTKLLLSIPPILKLADSLSLKVKSVRYSRGSFICPSAQ IYPHRSFSEEVCVLDGYFAKLGSGSKAYVMGGWDEQQKWHVYSASADSGLIDEPIYTVEMCMTGLDREKAAVFFKTQSPSGAVMTIDSGIRKILPDSEIC DFDFDPCGYSMNAIEGDAVSTIHVTPEDGFSYASFEMMGYNPQEVDLNGVVKRVLACFKPSEFSVAVHANVAGKQMELACLLDVKGYCRGERSLEELGMG GSIVYQKFELSGESESPRSTLKCCFKEENEEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25570			Adenosylmethionine decarboxyla...		Lus10000156 [exp]	0	1
AT3G25570			Adenosylmethionine decarboxyla...		Lus10034412 [exp]	1.0	0.9743
AT3G47610			transcription regulators;zinc ...		Lus10024226 [exp]	3.0	0.8264
AT1G23770			F-box family protein (.1)		Lus10006138 [exp]	3.2	0.8313
					Lus10003592 [exp]	8.8	0.7978
AT5G10460			Haloacid dehalogenase-like hyd...		Lus10005305 [exp]	11.2	0.7882
AT1G53440			Leucine-rich repeat transmembr...		Lus10005550 [exp]	11.8	0.7974
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10017097 [exp]	15.7	0.8229
AT2G14910			unknown protein		Lus10013888 [exp]	18.0	0.7834
AT5G57700			BNR/Asp-box repeat family prot...		Lus10006994 [exp]	20.1	0.8137
AT2G39890		ATPROT1, ProT1	proline transporter 1 (.1.2)		Lus10009877 [exp]	20.8	0.7944

Compare expression of checked genes

Lus10000156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.