Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11660 160 / 2e-49 NHL1 NDR1/HIN1-like 1 (.1) AT3G52470 157 / 3e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35960 156 / 4e-48 NHL12 NDR1/HIN1-like 12 (.1) AT5G06330 150 / 1e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G09590 139 / 2e-41 NHL22 NDR1/HIN1-like 22 (.1) AT2G35970 137 / 2e-40 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 136 / 3e-40 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22200 117 / 1e-32 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 114 / 2e-31 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G05657 97 / 1e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021286 [exp] 185 / 2e-59 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016960 [exp] 183 / 2e-58 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10029406 [exp] 170 / 1e-53 AT3G11660 252 / 7e-86 NDR1/HIN1-like 1 (.1) Lus10004202 [exp] 169 / 6e-53 AT3G11660 257 / 8e-88 NDR1/HIN1-like 1 (.1) Lus10043410 [exp] 132 / 3e-38 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034175 [exp] 125 / 1e-35 AT3G44220 210 / 7e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10013327 [exp] 100 / 7e-26 AT3G11660 147 / 2e-44 NDR1/HIN1-like 1 (.1) Lus10032932 [exp] 97 / 1e-24 AT5G53730 211 / 4e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027133 [exp] 89 / 2e-22 AT3G52470 63 / 3e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G204200 [exp] 166 / 5e-52 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1) Potri.016G071500 [exp] 164 / 4e-51 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.009G019600 [exp] 130 / 6e-38 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.005G088000 [exp] 115 / 5e-32 AT3G44220 194 / 5e-63 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G006000 [exp] 102 / 4e-27 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 98 / 2e-25 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 97 / 5e-25 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G002400 [exp] 94 / 6e-24 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204300 [exp] 70 / 2e-14 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071600 [exp] 64 / 2e-12 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10000157 pacid=23145814 polypeptide=Lus10000157 locus=Lus10000157.g ID=Lus10000157.BGIv1.0 annot-version=v1.0 ATGGGCTTCCTCCAAAACGCTGCCGAGAAGGCGTATTTTCTACTGACAGGGGAGCAATGGCGCTGCCACTACAGCAACCGACGACCCAGCTTAACCTTGA GCAAGATCTTGTGCGGGATATTCATCTGGATTCTGATCCTCCTGGGCATCACCGTATTCATAATATGGGCCGTCCTCCGTCCAAGCAAGCCAACTTTCAT CCTCCAAGACGCCACCGTTTACGCCTTCAACACTACCTCCACGCCCAACAACTTCCTCACATCGCACTTCCAGGTCACCTTCTCCACGCGGAACCCCAAC GGCAGGATCGGGATCTACTACGACCAGCTGCAGGTGTATGCCAAGTACCGCAACCAGCAGATCACCCGCGAGGCTCCCGTACGGCCGTTCTACCAGGGAC ACAAGGAGACCAATGTATGGTCTCCTTTGGTCTATGGCAACGATATCCCTGTGTCTCCTTACAATTTGGCTGCCCTCACCCTCGACCAGGCCGAGGGTAG CGTGCCCGTGTTGATCAAGATGGTCCGTAGAAATTGCACAGCACTGAACCATTTATTGCAAGACTTTGAAAAGCTTACACTTCACAACATAAGAACAAAC AATTACCTCGAAACTTAA
AA sequence Show only first row Show all	>Lus10000157 pacid=23145814 polypeptide=Lus10000157 locus=Lus10000157.g ID=Lus10000157.BGIv1.0 annot-version=v1.0 MGFLQNAAEKAYFLLTGEQWRCHYSNRRPSLTLSKILCGIFIWILILLGITVFIIWAVLRPSKPTFILQDATVYAFNTTSTPNNFLTSHFQVTFSTRNPN GRIGIYYDQLQVYAKYRNQQITREAPVRPFYQGHKETNVWSPLVYGNDIPVSPYNLAALTLDQAEGSVPVLIKMVRRNCTALNHLLQDFEKLTLHNIRTN NYLET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52470			Late embryogenesis abundant (L...		Lus10000157 [exp]	0	1
					Lus10011769 [exp]	5.3	0.8027
AT3G54310			unknown protein		Lus10004782 [exp]	5.4	0.8833
AT1G09290			unknown protein		Lus10012754 [exp]	7.5	0.8798
					Lus10024992 [exp]	9.2	0.8757
					Lus10037862 [exp]	9.8	0.7652
					Lus10022108 [exp]	11.5	0.8545
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	12.8	0.8545
AT5G26150			protein kinase family protein ...		Lus10024998 [exp]	14.1	0.8545
					Lus10010826 [exp]	15.2	0.8545
					Lus10011629 [exp]	16.2	0.8545

Compare expression of checked genes

Lus10000157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.