Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09010 360 / 2e-117 glycoside hydrolase family 2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029917 [exp] 662 / 0 AT1G09010 1407 / 0.0 glycoside hydrolase family 2 protein (.1) Lus10004484 [exp] 409 / 5e-136 AT1G09010 1183 / 0.0 glycoside hydrolase family 2 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021200 [exp] 417 / 7e-139 AT1G09010 1457 / 0.0 glycoside hydrolase family 2 protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000159 pacid=23163519 polypeptide=Lus10000159 locus=Lus10000159.g ID=Lus10000159.BGIv1.0 annot-version=v1.0 ATGTGGAAGAAGCACACCGGTGTACTAATCTGGAAGAATCAGAATCCGTGGACAGGTCTTCGCGGTCAGTTCTACGATCATCTCCTCGACCAAACTGCAG GCTTCTATGGGTGCCGGTCTGCTGCAGAACCCATACACGTGCAACTAAACCTTGCCACTTATTTCATCGAGGTTGTCAACACTCTATCGAAAAGTCTGTC CAATGTGGCTATAGAAGTATCGGTCTGGGACCTCGATGGTATGTGCCCGTACTACAAAGTCCACGAAGACCTCTCGTTTCCCTTGAAGAAGACCACACGT GTGGCCGAGATGAAGTACCCGAGTTCCAAGAATCCGAAACCGGCATACTTCCTCCTCCTGAAGCTCTACAATAAGTCGGACTACAAGATCCTTTCCAGGA ACTTCTACTGGCTCCATCTTCCCGGCAGCGACTACACCTCGCTCCAGGACCCGTTCCGGAAGAATAAGATCCCTCTCAAGCTCACAACGCAGACTTTCGT CTCCGGGAGATCCTACGAAATGGAAGTCCTCGTGCAGAACTCCTCCAAGGTGAAACAACCACACTTGACGAGTTCAACTCAGAAGAACAACTTCATCGTA GCTGATGATGATGACGGCGTGGATTACGATTTGAACTCGGGACTGCAACTTCTTGTGCCGGATGGACATGGTAAAAAGGATGGCTTATTTGGAACGTTGT CCAGAATGTTTGGAGCAACAAAGGGATCGTCTTCTTTGAAGGTTTCATCCGAAGTGAATGGCAGCGACGTTGGAGTTGCATTCTTCCTGCAGTTCTCGGT CCATGCTGTGAAATCGCGATATGAAGAAGGCGAAGACACGAGGATTCTGCCTGTCCATTACTCGGATAACTACTTCTCGCTTGTCCCGGGAGAGGAGATG ACCGTTAAACTTTCGTTCGAGGTTCCTGCTGGTGTCACTCCAAGGCTGACTCTCCGTGGCTGGAACTACCCTGGTGGCCATACAGTTCACCATTGA
AA sequence Show only first row Show all	>Lus10000159 pacid=23163519 polypeptide=Lus10000159 locus=Lus10000159.g ID=Lus10000159.BGIv1.0 annot-version=v1.0 MWKKHTGVLIWKNQNPWTGLRGQFYDHLLDQTAGFYGCRSAAEPIHVQLNLATYFIEVVNTLSKSLSNVAIEVSVWDLDGMCPYYKVHEDLSFPLKKTTR VAEMKYPSSKNPKPAYFLLLKLYNKSDYKILSRNFYWLHLPGSDYTSLQDPFRKNKIPLKLTTQTFVSGRSYEMEVLVQNSSKVKQPHLTSSTQKNNFIV ADDDDGVDYDLNSGLQLLVPDGHGKKDGLFGTLSRMFGATKGSSSLKVSSEVNGSDVGVAFFLQFSVHAVKSRYEEGEDTRILPVHYSDNYFSLVPGEEM TVKLSFEVPAGVTPRLTLRGWNYPGGHTVHH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09010			glycoside hydrolase family 2 p...		Lus10000159 [exp]	0	1
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Lus10002699 [exp]	2.0	0.8475
AT5G26770			unknown protein		Lus10031444 [exp]	3.0	0.8566
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10029959 [exp]	3.0	0.8381
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10036442 [exp]	3.2	0.8778
AT4G17085			Putative membrane lipoprotein ...		Lus10029696 [exp]	5.7	0.8228
					Lus10005797 [exp]	5.8	0.8578
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10009823 [exp]	7.7	0.8418
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10028430 [exp]	9.4	0.8396
AT5G51170			unknown protein		Lus10035151 [exp]	10.2	0.8403
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10024031 [exp]	10.4	0.7942

Compare expression of checked genes

Lus10000159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.