Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015505 [exp] 184 / 1e-58 AT3G02920 231 / 8e-74 Replication protein A, subunit RPA32 (.1.2) Lus10019977 [exp] 138 / 2e-43 AT3G18990 41 / 7e-05 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10040408 [exp] 92 / 3e-25 ND 41 / 8e-05 Lus10032159 [exp] 96 / 7e-25 AT3G18990 93 / 8e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10014528 [exp] 93 / 1e-23 AT3G18990 95 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023843 [exp] 85 / 1e-20 AT3G18990 81 / 9e-17 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 39 / 0.0003 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010756 [exp] 38 / 0.0004 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10032315 [exp] 38 / 0.0005 AT3G19184 79 / 8e-16 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10000160 pacid=23173745 polypeptide=Lus10000160 locus=Lus10000160.g ID=Lus10000160.BGIv1.0 annot-version=v1.0 ATGATCGTTATCTCAGCTACAGTCAGGAAACATAACTTTTTAGCCAAGATCACAGACAGCAGCCTCATTAATGAAGATTTGTCGAAGGCAACTCTACGTG TGTTCTACAAAGAGGAGGTGGACGAGAGGGAGGCTACGCTGTTCGAGGCGAAACGGGATCGGAGGAAGTATATATCGGGGTGGATGGCGTTCTGCACGAA ACATAAGTTGATAGTGGGAGACGTCTGTTTGCTCGAACGTGTTGACCCCGAAACTAACCTCTTTATTGTTCGCATATTCCATGCGGGTCGTGGTTGA
AA sequence Show only first row Show all	>Lus10000160 pacid=23173745 polypeptide=Lus10000160 locus=Lus10000160.g ID=Lus10000160.BGIv1.0 annot-version=v1.0 MIVISATVRKHNFLAKITDSSLINEDLSKATLRVFYKEEVDEREATLFEAKRDRRKYISGWMAFCTKHKLIVGDVCLLERVDPETNLFIVRIFHAGRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000160 [exp]	0	1
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039688 [exp]	4.0	0.9225
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Lus10005825 [exp]	17.8	0.8920
AT3G12690		AGC1.5	AGC kinase 1.5 (.1.2.3)		Lus10001757 [exp]	19.4	0.8214
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005594 [exp]	32.8	0.8817
AT4G18220			Drug/metabolite transporter su...		Lus10043396 [exp]	35.0	0.8837
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10006405 [exp]	49.2	0.8706
AT3G11210			SGNH hydrolase-type esterase s...		Lus10035506 [exp]	54.3	0.8626
AT4G27300			S-locus lectin protein kinase ...		Lus10038555 [exp]	61.3	0.8375
AT1G09490			NAD(P)-binding Rossmann-fold s...		Lus10026153 [exp]	76.7	0.8533
					Lus10023665 [exp]	104.5	0.8430

Compare expression of checked genes

Lus10000160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.