Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22900 299 / 8e-91 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44900 294 / 4e-89 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT1G08140 265 / 3e-78 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT1G08135 264 / 7e-78 ATCHX6B, CHX6B cation/H+ exchanger 6B, cation/H+ exchanger 6B (.1) AT3G44910 261 / 6e-77 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) AT3G44930 260 / 1e-76 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT1G08150 256 / 4e-75 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT2G28180 256 / 1e-74 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT2G13620 251 / 5e-73 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT5G22910 249 / 2e-72 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040961 [exp] 701 / 0 AT5G22900 271 / 7e-83 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10013423 [exp] 662 / 0 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10040963 [exp] 656 / 0 AT3G44900 376 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10000154 [exp] 599 / 0 AT5G22900 216 / 2e-63 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10009846 [exp] 545 / 0 AT5G22900 115 / 3e-28 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10040962 [exp] 287 / 2e-92 AT3G44910 64 / 2e-15 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) Lus10043128 [exp] 268 / 1e-79 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 267 / 4e-79 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10030013 [exp] 251 / 1e-72 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G182900 [exp] 592 / 0 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G099000 [exp] 567 / 0 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.010G171200 [exp] 567 / 0 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 293 / 5e-89 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.019G123800 [exp] 287 / 6e-87 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098300 [exp] 288 / 7e-87 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.019G123700 [exp] 287 / 2e-86 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.006G176400 [exp] 278 / 2e-83 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.010G183000 [exp] 266 / 5e-79 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.013G153200 [exp] 261 / 9e-77 AT2G13620 427 / 2e-137 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10000161 pacid=23163090 polypeptide=Lus10000161 locus=Lus10000161.g ID=Lus10000161.BGIv1.0 annot-version=v1.0 ATGGATCCAAGCCTGATCCCGCAATCCGGCAGGAAAGCAGTATTCATGGGGTTCCTTCTATTTGCTTACCCTTTCACTATGATACACACAATTGTAGTTG AGTTCCAAAAAGACAACATTTTCAACTTCGAGCTCAAACTTGCAATTTACAAAGGTGTTGGAATTGTCTTTGGTTCCATCACAACTTCCCAATTCGTTGG AGTGAGTCACCTCTTGACACAGCTTAGGATAACCAACTCTCAGCTTGGACACCTTGCCTTAGCATCCACATTGGTCAGTGAGTTGCTCCGATTCGCCTAC TCCTCCACTCTTGGTGTCCTGGAAGCGTTCATGTTCGTAGCTAGGAGATCGGGGATCCAATCCTTACTCTTCAGCATGCTTTTGGTAGGCTTCATTATGG TTGTGTTGAGAGGGTTTGTGCTTTGGGCAATCAGGAACACCCCACAGGGGAAACCCATGAAGGAAATCTACATAACTATGGTTGTTGGTGTGCTTCTCAG TTTAGTCACACTTGGGGATTCTGTTGGAATGCATTACCTTTTTGGCCCTTTCCTTTTGGGTCTTATCATACCAGCTGGATCTCCATTGGCAACCAGTTTG ATTGCCAAGCTTGAAACTGCTGTCAATGGCTTGTTTATCCCCATCATTCTCATGTTCTGCTCCACAAGCTTTGATTTGGTAGCCTTTTCCCAGGATTACT CCAAAGTTCTTCCCTTTAGGATTACCTTGCTTGGTTATTTCTTGAAGTTGGCCTTCACTTTCTTAATGGGACTCGGTTTTAAGCTATCTGCTAAAGATTG TGCAGCTTACACACTCATTGTCAATGCTAAAGGTGTTCTTGAAGTTGGCGTCTTCCTCAGCTTTGGTAACCTTGCAAACAGACAACTGGAGACTACCTCT GCTATTTTCTTGGTGTTTTTTCTGTCAAGTATTGCCCCGCCATTCATAAGGCTTCTCTACGATCCTACAAAACAGTACATTGGTTACAAGAGGAAGTGCA TTCAGTATGCTCCTGACAACGCTCCTCTCCACATCTTGGCTTGTGCACACAAACAGGATGATGCAGTTGCAGTCCTCAAACTGCTGGAGTTTTCCAATCC CACTAAGCAAAGTCCCTTAGTAGTATTGGGGCTATGCTTGGAAGAGCTTGTAAGCAGCTTCACCCCTCTTCTAATCAACCACCAACTAGGACAGAAAGTT TCTTCCTCCAAAGGATCAAAATCGCAGCACATCCTCGACGTATTCAACTACTTCGCGTCGCAGTTCAAAAAACTGGCACAGGTGAACGCCTTCACCGCAA TCTCCCACCTCAAGCAGATGCACGAGGACATCTGCTGGCTCGCATTCGACAAGGCTGTTTCATTGATCGTACTTCCGTTTCATAACAAGTGGAACCACAA AGGCCAAATGATTCGTGGCATTGAAGACCTCAGGAGCTTGAACATCAATGTCTTGAGTAGAGCCCCTTGCTCTGTTGGGATCTTGGTCGACCGTAGGAGG GCTCTGGGACTTTCATCCATCTTCGTGACTTCGGCAGTTTATCGTGTGGTGCTTTTGTTCGTGGGAGGGTCCGATGACCGGGAGGCACTGGCGTTTGCAT TGAGGATGGCTGGGAGTCCCAGGGTACAACTGACTATAGTTCAGTTCATGGTTGGTGAGGAGAATGTAGTGGATCGTTGGGAGGTAATGCTTGATGCAGA GGCGATTAGGATCATGAGGCAAGAGGTGAACGTTAGTGGTAATGTGAAGTTTGTGGAAGAACACGTGAGAGATGGATCAGATACGTCAACGATAGTGAGA CAAATGGAGGCGAATCTGGACCTGGTAATAGTGGGGAGGAGGCATGATACGGACTGTCAAGCTCTGTCAGGACTTGCAGAGTGGATGGATGTCCACTTGG AGACATATTAG
AA sequence Show only first row Show all	>Lus10000161 pacid=23163090 polypeptide=Lus10000161 locus=Lus10000161.g ID=Lus10000161.BGIv1.0 annot-version=v1.0 MDPSLIPQSGRKAVFMGFLLFAYPFTMIHTIVVEFQKDNIFNFELKLAIYKGVGIVFGSITTSQFVGVSHLLTQLRITNSQLGHLALASTLVSELLRFAY SSTLGVLEAFMFVARRSGIQSLLFSMLLVGFIMVVLRGFVLWAIRNTPQGKPMKEIYITMVVGVLLSLVTLGDSVGMHYLFGPFLLGLIIPAGSPLATSL IAKLETAVNGLFIPIILMFCSTSFDLVAFSQDYSKVLPFRITLLGYFLKLAFTFLMGLGFKLSAKDCAAYTLIVNAKGVLEVGVFLSFGNLANRQLETTS AIFLVFFLSSIAPPFIRLLYDPTKQYIGYKRKCIQYAPDNAPLHILACAHKQDDAVAVLKLLEFSNPTKQSPLVVLGLCLEELVSSFTPLLINHQLGQKV SSSKGSKSQHILDVFNYFASQFKKLAQVNAFTAISHLKQMHEDICWLAFDKAVSLIVLPFHNKWNHKGQMIRGIEDLRSLNINVLSRAPCSVGILVDRRR ALGLSSIFVTSAVYRVVLLFVGGSDDREALAFALRMAGSPRVQLTIVQFMVGEENVVDRWEVMLDAEAIRIMRQEVNVSGNVKFVEEHVRDGSDTSTIVR QMEANLDLVIVGRRHDTDCQALSGLAEWMDVHLETY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10000161 [exp]	0	1
					Lus10010597 [exp]	13.8	0.7091
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10008702 [exp]	13.9	0.7294
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10022786 [exp]	16.7	0.6903
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10037587 [exp]	23.2	0.6840
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10012235 [exp]	23.4	0.7045
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010833 [exp]	24.5	0.6756
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10027627 [exp]	29.0	0.6690
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10029215 [exp]	40.6	0.6776
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10008122 [exp]	42.0	0.6275
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10013035 [exp]	46.0	0.6654

Compare expression of checked genes

Lus10000161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.