Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19950 63 / 2e-12 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043254 [exp] 171 / 4e-52 AT5G19950 285 / 4e-91 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3) Lus10019397 [exp] 141 / 1e-40 AT5G19950 285 / 2e-91 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G073100 [exp] 89 / 2e-21 AT5G19950 274 / 6e-87 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000162 pacid=23180821 polypeptide=Lus10000162 locus=Lus10000162.g ID=Lus10000162.BGIv1.0 annot-version=v1.0 ATGGCTCCTCAAAACCAATATGATCAGCGGTACAGAGGCCGAGGCCGTAGACAACACAGGGGAAGGGGTAGACATGATGACGAACCTCAGACTTGGACAT TAGAGGAGTGGCAAAACAGGAACGATGGAGCTAAGCCGGGGATGGGAAACGAGTTTCCAGATACTAGTAATGACGAAGATTTAGCTTGGCAGTTGCAAAA CCAGCTTGCTATGGAGGATGCACATGTACAGAGAGGAACACAGGGCACAGTGGCAACAGACATTCGGATGTCCATGTTTAGCTTTGAAAGAGACGACGAC CCGAGTCATGACATGGAGCGTGGAGGTAGAGGTAGAGGTAGAGGCAGAGGCAGAGGTGGGAGAGGTAGAGGGAGAGGAAGAGGTAGACGCGGTTAA
AA sequence Show only first row Show all	>Lus10000162 pacid=23180821 polypeptide=Lus10000162 locus=Lus10000162.g ID=Lus10000162.BGIv1.0 annot-version=v1.0 MAPQNQYDQRYRGRGRRQHRGRGRHDDEPQTWTLEEWQNRNDGAKPGMGNEFPDTSNDEDLAWQLQNQLAMEDAHVQRGTQGTVATDIRMSMFSFERDDD PSHDMERGGRGRGRGRGRGGRGRGRGRGRRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19950			Domain of unknown function (DU...		Lus10000162 [exp]	0	1
AT3G14080			Small nuclear ribonucleoprotei...		Lus10008124 [exp]	3.0	0.8412
AT5G26770			unknown protein		Lus10031444 [exp]	6.0	0.8288
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10010129 [exp]	11.8	0.8116
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10025719 [exp]	13.6	0.8113
AT5G19490	CCAAT		Histone superfamily protein (....		Lus10026780 [exp]	14.4	0.8050
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	15.5	0.8043
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030606 [exp]	16.6	0.7851
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10017671 [exp]	16.9	0.7553
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10038766 [exp]	19.5	0.8148
AT1G66930			Protein kinase superfamily pro...		Lus10022367 [exp]	19.6	0.8026

Compare expression of checked genes

Lus10000162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.