Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04150 386 / 4e-127 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G12970 375 / 3e-125 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 373 / 2e-124 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT3G57880 371 / 2e-123 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G11610 360 / 6e-117 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G06850 352 / 4e-116 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 349 / 1e-112 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 331 / 8e-106 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 323 / 4e-103 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 316 / 9e-101 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011271 [exp] 555 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 377 / 1e-125 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 375 / 3e-125 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10037479 [exp] 365 / 3e-124 AT5G48060 866 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 371 / 3e-123 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 366 / 2e-121 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 361 / 2e-117 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 345 / 3e-111 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 333 / 3e-106 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254400 [exp] 443 / 6e-149 AT1G04150 1096 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 372 / 4e-124 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 368 / 2e-122 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 368 / 2e-122 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 367 / 3e-122 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 367 / 4e-122 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 366 / 1e-121 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 362 / 8e-120 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 360 / 5e-119 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 363 / 4e-118 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF08372 [flax] [poplar] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10000164 pacid=23143549 polypeptide=Lus10000164 locus=Lus10000164.g ID=Lus10000164.BGIv1.0 annot-version=v1.0 ATGCTGCATCCGACAGGGGTGAAGAAAATGGGAGAGATTCATTTGGCAGTGAGGTTCTCTTGTGCTAATGTGGCCAATATGTTGAACATGTACACTCTCC CACTACTACCAAAGATGCACTACGTACATCCTTTGAGTGTGAACCAAGTCGAGACATTGAGGTATCAGGCGATGAATGTGTTGTCCTCGAGGCTGAGTAG GGCCGAGCCACCGTTGGGGAGGGAGGTGGTGGAGTACATGATTGATCATGATTCTCATATGTGGAGCATGAGGAGGAGCAAAGCCAATTTCGCAAGGGTG ATCAATGTACTCTCCGGTCTAGTTGCATTTGGAAGAATGGTGGAGGCAATGAGGAGTTGGCACAAACCAGTATACTCAGTCCTCTTCCTAGTAGTATTCT TGTTTCTTGTACTTATGCCGGAGCTCATCATGCCATTGATGCTCGTAATGATGGCGGTAGTGGGACTATGGAGATACCATTCGTCAAGGCCACGCCATCC GCCTCACATGGATACAAGGCTGTCCAATGCAGAGAATGTAAATCCGGACGAGCTAGATGAAGAGTTCGACTCGTTTCCAACGAGTAGGAACGCTGACATT GTGCGGATGAGGTATGATAGGGTGAGGAGTGTGGCGGGAAGGATACAGACATTGGTGGGTGACATGGCAACTCAAGGGGAGAGATTTTATGCGCTGGTGA GCTGGAGGGATCCGAGGGCAACGTTCCTGTTTGTGGCGGGTTGCCTTGTGGCTGCTACTGGGTTGTATGGGGTGCCTGTGAGAGTTGTGGTGGGTGTGTG GGGGTTGTACATGATGAGGCCTCCCAGGTTCAGGAATAAACTGCCGTCCAAGGCTTCCTGCTTCTTCAAGAGGTTGCCTACTAAGGCTGATAGCTTGCTC TAG
AA sequence Show only first row Show all	>Lus10000164 pacid=23143549 polypeptide=Lus10000164 locus=Lus10000164.g ID=Lus10000164.BGIv1.0 annot-version=v1.0 MLHPTGVKKMGEIHLAVRFSCANVANMLNMYTLPLLPKMHYVHPLSVNQVETLRYQAMNVLSSRLSRAEPPLGREVVEYMIDHDSHMWSMRRSKANFARV INVLSGLVAFGRMVEAMRSWHKPVYSVLFLVVFLFLVLMPELIMPLMLVMMAVVGLWRYHSSRPRHPPHMDTRLSNAENVNPDELDEEFDSFPTSRNADI VRMRYDRVRSVAGRIQTLVGDMATQGERFYALVSWRDPRATFLFVAGCLVAATGLYGVPVRVVVGVWGLYMMRPPRFRNKLPSKASCFFKRLPTKADSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04150			C2 calcium/lipid-binding plant...		Lus10000164 [exp]	0	1
AT1G04150			C2 calcium/lipid-binding plant...		Lus10011271 [exp]	1.0	0.9640
AT4G34880			Amidase family protein (.1)		Lus10002804 [exp]	3.2	0.9258
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	3.7	0.9611
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009579 [exp]	6.0	0.9321
AT1G79060			unknown protein		Lus10031795 [exp]	6.0	0.9360
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10037668 [exp]	7.2	0.9063
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10002538 [exp]	11.2	0.9139
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019870 [exp]	12.4	0.9245
AT5G40030			Protein kinase superfamily pro...		Lus10032185 [exp]	13.2	0.9299
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Lus10036348 [exp]	15.0	0.8378

Compare expression of checked genes

Lus10000164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.