Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16720 327 / 7e-115 Ribosomal protein L23/L15e family protein (.1) AT4G17390 326 / 1e-114 Ribosomal protein L23/L15e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028965 [exp] 431 / 3e-155 AT4G16720 343 / 5e-121 Ribosomal protein L23/L15e family protein (.1) Lus10004743 [exp] 366 / 3e-130 AT4G16720 345 / 1e-122 Ribosomal protein L23/L15e family protein (.1) Lus10007805 [exp] 366 / 3e-130 AT4G16720 345 / 1e-122 Ribosomal protein L23/L15e family protein (.1) Lus10009653 [exp] 357 / 8e-127 AT4G16720 350 / 2e-124 Ribosomal protein L23/L15e family protein (.1) Lus10009017 [exp] 350 / 5e-124 AT4G16720 343 / 1e-121 Ribosomal protein L23/L15e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G106800 [exp] 347 / 1e-122 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.003G078700 [exp] 347 / 1e-122 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.001G156100 [exp] 345 / 3e-122 AT4G16720 330 / 2e-116 Ribosomal protein L23/L15e family protein (.1) Potri.002G141500 [exp] 342 / 6e-121 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1) Potri.014G057300 [exp] 342 / 6e-121 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0652 [flax] [poplar] S24e_L23_L15e PF00827 [flax] [poplar] Ribosomal_L15e Ribosomal L15
Representative CDS sequence Show only first row Show all	>Lus10000165 pacid=23175419 polypeptide=Lus10000165 locus=Lus10000165.g ID=Lus10000165.BGIv1.0 annot-version=v1.0 ATGGACGGCCCAGATCTTGTGTTGTCAGTTTATAAATTCGTCGTTAGGGTTTTGCATTTCAGCTCTCTGAAACTTCTTTCAAGCCGAAACCCTTCCGGTG AAAAGCTGCGAGCTGGTGCTTACAAATATGTGTCTGAGCTATGGAGGAAGAAGCAGTCGGATGTTATGCGGTTTATCCAGAGGGTGAGGTGCTGGGAGTA TCGTCAGCATCCATCGATTGTTCGTGTCACCCATCCCACTCGTCCTGATAAGGCTAGGCGCTTGGGCTACAAGGCCAAGCAGGGATACGTTGTTTACCGT GTTCGTGTGAGACGCGGTGGCAGGAAGAGGCCAGTCCCCAAGGGTATTGTGTACGGTAAGCCAACGAACCAGGGAGTTACTCAGCTGAAGTTTCAGAGAA GCAAGAGGTCAGTTGCTGAGGAGCGTGCTGGAAGGAAGCTGGCTGGTCTTAGGGTTCTGAATTCTTACTGGGTCAATGAGGATTCTACATACAAGTACTT TGAAGTGATCCTCGTGGATGTTGCACACAATGCCATCCGCAATGACCCGAGAATCAACTGGCTATGCAACCCAGTCCACAAGCACAGGGAGCTTCGGGGT CTTACTTCTGCGGGAAAGAAGTACAGGGGTCTTCGTGGAAAGGGGTCTCGCTACCACAAGAACAAGCCTTCTCGCAGGGGCACCTGGAAGAGAAACAACA CCCTTTCCCTTCGTCGTTACCGTTAG
AA sequence Show only first row Show all	>Lus10000165 pacid=23175419 polypeptide=Lus10000165 locus=Lus10000165.g ID=Lus10000165.BGIv1.0 annot-version=v1.0 MDGPDLVLSVYKFVVRVLHFSSLKLLSSRNPSGEKLRAGAYKYVSELWRKKQSDVMRFIQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYVVYR VRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLAGLRVLNSYWVNEDSTYKYFEVILVDVAHNAIRNDPRINWLCNPVHKHRELRG LTSAGKKYRGLRGKGSRYHKNKPSRRGTWKRNNTLSLRRYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10000165 [exp]	0	1
AT3G02080			Ribosomal protein S19e family ...		Lus10021865 [exp]	2.0	0.9433
AT5G27700			Ribosomal protein S21e (.1)		Lus10029895 [exp]	2.2	0.9507
AT5G59850			Ribosomal protein S8 family pr...		Lus10023429 [exp]	6.3	0.9316
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10022881 [exp]	6.3	0.9287
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Lus10009302 [exp]	6.5	0.9216
AT5G52370			unknown protein		Lus10016449 [exp]	8.1	0.9313
AT3G02080			Ribosomal protein S19e family ...		Lus10010339 [exp]	8.3	0.9127
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10028965 [exp]	8.8	0.9331
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10041264 [exp]	12.1	0.9312
AT2G27710			60S acidic ribosomal protein f...		Lus10006270 [exp]	14.5	0.9013

Compare expression of checked genes

Lus10000165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.