Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57460 348 / 3e-117 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007487 [exp] 451 / 2e-157 AT5G57460 885 / 0.0 unknown protein Lus10007798 [exp] 408 / 2e-140 AT5G57460 890 / 0.0 unknown protein Lus10004737 [exp] 203 / 6e-67 AT5G57460 182 / 2e-55 unknown protein Lus10028963 [exp] 209 / 1e-65 AT5G57460 517 / 5e-180 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G168200 [exp] 364 / 3e-123 AT5G57460 860 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000167 pacid=23169983 polypeptide=Lus10000167 locus=Lus10000167.g ID=Lus10000167.BGIv1.0 annot-version=v1.0 ATGAAAGGTCCCGAAATGTACATAGTTGAGGAAGTGAGTGCAGAGTTTAGGGAGTCGCAGCTTGCTAGAGTTGGATTGATGGGTGTGGTTTATTTGAAGA CATTGCCGATCGGGAGAGCCGGGGATAAAGAGACCGAGTTTTCGTTCCGTGTCGATAACACGAAAGCAGTGAAGAGGTTTGTTATGCATAATTCGAAAGT TAGTAGCCTTGGTAACGGAATGTTCCACGTCAGGACTGCTGCCTCTGATGAGCCTATACCGATATTCAAGTACAGTTTGGTCCCTAGCTTAACTCCATTG CCGTTGAGGGTTCGTCTAGTTCAGCGTCACAGTGGAACTCTTTTCTCTGTAATGATCCAGTACGTCTCCAATCCGGACCTGCCAGTGCCGTTGAGTGATG TGACGTTCGTGTTGAAGTTGCCTGTCGATCCGACATTGTTGACAGTGTCGCCAAAAGCAGCGTTGAACAGGTCTCAGAAGGAGCTGAAATGGGTTGTGCC GGAGATCCCACTGAAGGGCTCTCCCGGTAAGTTGAGGGTGCGGATGCCAGTTGATATCAGTGAAGGAGAAGGTGATGAGGATATAGAGGCTGTTTGTTAT ATTAAATTCTCCATGGAAGGAGCTACTTCGCTATCGGAGATTTGCTTACGGCCTGCCTCGGAAGGGAACACCGACTTCCACGAGGTCGATCACAGGTACC AGAGTGGGGTTTATACTTGCAATTGA
AA sequence Show only first row Show all	>Lus10000167 pacid=23169983 polypeptide=Lus10000167 locus=Lus10000167.g ID=Lus10000167.BGIv1.0 annot-version=v1.0 MKGPEMYIVEEVSAEFRESQLARVGLMGVVYLKTLPIGRAGDKETEFSFRVDNTKAVKRFVMHNSKVSSLGNGMFHVRTAASDEPIPIFKYSLVPSLTPL PLRVRLVQRHSGTLFSVMIQYVSNPDLPVPLSDVTFVLKLPVDPTLLTVSPKAALNRSQKELKWVVPEIPLKGSPGKLRVRMPVDISEGEGDEDIEAVCY IKFSMEGATSLSEICLRPASEGNTDFHEVDHRYQSGVYTCN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57460			unknown protein		Lus10000167 [exp]	0	1
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	2.2	0.9386
AT4G32390			Nucleotide-sugar transporter f...		Lus10002904 [exp]	2.8	0.9353
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10017425 [exp]	3.5	0.9339
AT5G39570			unknown protein		Lus10016220 [exp]	5.3	0.9337
AT3G08640			Protein of unknown function (D...		Lus10035607 [exp]	5.3	0.9188
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031278 [exp]	6.0	0.9114
AT2G25430			epsin N-terminal homology (ENT...		Lus10002920 [exp]	6.9	0.9250
AT4G22580			Exostosin family protein (.1)		Lus10004341 [exp]	7.1	0.9266
AT1G61790			Oligosaccharyltransferase comp...		Lus10018363 [exp]	8.8	0.9096
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10006854 [exp]	8.9	0.9025

Compare expression of checked genes

Lus10000167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.