Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038619 [exp] 244 / 5e-84 ND / Lus10010596 [exp] 46 / 2e-06 ND / Lus10030083 [exp] 39 / 0.0004 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000169 pacid=23161334 polypeptide=Lus10000169 locus=Lus10000169.g ID=Lus10000169.BGIv1.0 annot-version=v1.0 ATGGCGATGGATTGTGCGATCCTGCCTTCTAATTCAGAGGCTGGATCTACTTCATCCTCTTCCTCACCTACTCAAGTGCATGGATCTCATCCTCTTCCTC ACAGTGCTTGGCATGAGAAGCCAAAACCCCAACCATCACCTTTGATGGATGTTAATAGCTCTGGAGGCAATGAATCTAAATCTCCTTTGCGAGAGGAGGA TTCACCTCTAACTACTAACATTTCATCGGCGGGAGGGGGAAGAATGGTTCAGATGGAGACTCTGTTAGGAGTGGACACCTTGACTAAACCTCAACAAGGG GTCTCTGTTAAAGCTTCTTTGGAGCTGGCTCAGGATTTGGCTAAATTAGTTGAGATTGAAGAAGAAGTTGAGGAGGATGATGATTCAGAGGAGATTGATG AAGAAATTCAAATGGAGCCTCCCCCAACTCCTGGTCATGCTACGCTTGGTGACTTTATAAAGCATGTGACTATTACTCCTTAA
AA sequence Show only first row Show all	>Lus10000169 pacid=23161334 polypeptide=Lus10000169 locus=Lus10000169.g ID=Lus10000169.BGIv1.0 annot-version=v1.0 MAMDCAILPSNSEAGSTSSSSSPTQVHGSHPLPHSAWHEKPKPQPSPLMDVNSSGGNESKSPLREEDSPLTTNISSAGGGRMVQMETLLGVDTLTKPQQG VSVKASLELAQDLAKLVEIEEEVEEDDDSEEIDEEIQMEPPPTPGHATLGDFIKHVTITP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000169 [exp]	0	1
					Lus10038619 [exp]	1.0	0.9988
					Lus10040989 [exp]	4.1	0.7856
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039721 [exp]	5.5	0.8180
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028514 [exp]	6.2	0.8687
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10034380 [exp]	6.3	0.7973
					Lus10040805 [exp]	8.1	0.7947
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10028440 [exp]	8.5	0.7854
AT5G19875			unknown protein		Lus10006311 [exp]	9.5	0.8551
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10029047 [exp]	12.0	0.7320
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10043289 [exp]	12.0	0.7966

Compare expression of checked genes

Lus10000169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.