Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09600 535 / 0 Protein kinase superfamily protein (.1) AT1G53050 529 / 0 Protein kinase superfamily protein (.1) AT1G57700 513 / 9e-177 Protein kinase superfamily protein (.1) AT1G33770 504 / 2e-174 Protein kinase superfamily protein (.1) AT1G54610 494 / 3e-171 Protein kinase superfamily protein (.1.2.3) AT1G71530 486 / 9e-170 Protein kinase superfamily protein (.1.2) AT5G50860 484 / 5e-167 Protein kinase superfamily protein (.1) AT5G44290 479 / 3e-164 Protein kinase superfamily protein (.1.2.3.4) AT1G03740 469 / 1e-159 Protein kinase superfamily protein (.1.2) AT1G18670 468 / 4e-159 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008925 [exp] 863 / 0 AT1G09600 643 / 0.0 Protein kinase superfamily protein (.1) Lus10028890 [exp] 855 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 536 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 534 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 513 / 3e-178 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 509 / 1e-176 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 509 / 3e-175 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 502 / 3e-174 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10015727 [exp] 494 / 2e-169 AT1G18670 884 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G226900 [exp] 575 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.003G003700 [exp] 564 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 550 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 547 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 517 / 2e-180 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 516 / 8e-180 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 513 / 2e-178 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 512 / 5e-178 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.019G073100 [exp] 511 / 8e-177 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2) Potri.013G100100 [exp] 509 / 6e-176 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10000170 pacid=23157949 polypeptide=Lus10000170 locus=Lus10000170.g ID=Lus10000170.BGIv1.0 annot-version=v1.0 ATGATTCCTCTGAGCAGGGCAAGACTATTGAAATTTCTAGGGATCAAGAAAGTTTGGGTGGGTGTTATGGGCTGCATTTGCTCCAAAGGAGGCCAACAAG AGAATGGTAGTCTTAATGTAGAGAGTAGCGACGGCAAAACCAGCAAAGGGAAGAGCAAGAAATCTTCCAGACGGTTAGTTTCGAAACGAGACCAAGATAC CGAGACCGACGAGGAGTATGAGAACGTGTGCTCGATTATTAACCAAGGTAATGACGTCGACCATGATGTCGGGTCGTCCTCCCCGTTGGCAGTCCACGAT CATCATCACGAGGCCGACAGGAAGAGCAAATCCAAGATGTCGGGCGTCGGGATTCGAAGCATGGCGGTGGCTAATGGCGAGAAAGGAGCTCAAGTTGTCG CCGGTTGGCCTTCTTGGCTCACTGCTGTTGCTGGTGAAGCCATTAATGGTTGGATCCCTCGGAGGCTCGACTCTTTTGAAAAGTTAGAAAAGATTGGACA AGGAACATATAGTAGCGTTTACAAGGCTAAAGATCTCGAGTCGAAGAAAATAGTGGCACTGAAGAAAGTTCGTTTTGCCAACATGGATCCAGAGAGTGTC AAGTTCATGGCAAGAGAGATAATCATATTACGTAGACTAGATCATCAAAATGTTATGAAGCTTGAAGGCATCATCACGTCAAGAATGTCCGGTAGCTTGT ACCTCGTTTTCGAGTACATGGACCACGACCTCTCCGGTCTCTTATCAAGTGCAGGGTCTCAATTCACCGAATCTCAGGTGCTCGCTTCATTTGAAGTCGC ATTTCTCGAAATCGAATCAGTTACATTGATTAAATGCTACATGAAGCAGCTACTCCAGGGACTAGAGCATTGCCACAGCCGCGGAATCATGCACCGTGAC ATGAAAGGATCAAATCTTCTGATCGATTCCAACGGCATACTCAAGATTGCGGACTTCGGTCTTGCAACCTTCTGTAAGCCTAGCGACGACCAGCCTTTAA CGAGCCGGGTGGTCACTTTATGGTACAGACCACCCGAGCTTCTGCTCGGATCAACAAAGTACGGTGTAGAAGTCGATTTATGGAGTTCTGGTTGCATCCT GGCTGAATTGTTCAATGGAAAGCCTATCATGCCTGGAAGAACAGAGGTGGAGCAGATTCATAAAATCTTCAAGCTTTGTGGGTCACCTTCAGATGAGTAC TGGAAGACGTCAAAAGTGTCTCATAACACAGTCTTCAAACCACAACAGCCATACAAACGACGTGTCGTTGAAACATTCAAGGACATGATTCCTTCGTCGG CTATGGCACTTCTTGAAATGCTTCTTGCCCTAGAGCCTGAAGATCGCGGGTCAGCAACTTCAGCACTTACTAGCGAGTTCTTCACCACAGAGCCTCTTCC ATGTGACCCATCTAGCCTGCCAACTTACCCTCCCAGCAAGGAATTTGATGTCAAGTTCCGCGAAGACGAAGCTAAAAGGTAA
AA sequence Show only first row Show all	>Lus10000170 pacid=23157949 polypeptide=Lus10000170 locus=Lus10000170.g ID=Lus10000170.BGIv1.0 annot-version=v1.0 MIPLSRARLLKFLGIKKVWVGVMGCICSKGGQQENGSLNVESSDGKTSKGKSKKSSRRLVSKRDQDTETDEEYENVCSIINQGNDVDHDVGSSSPLAVHD HHHEADRKSKSKMSGVGIRSMAVANGEKGAQVVAGWPSWLTAVAGEAINGWIPRRLDSFEKLEKIGQGTYSSVYKAKDLESKKIVALKKVRFANMDPESV KFMAREIIILRRLDHQNVMKLEGIITSRMSGSLYLVFEYMDHDLSGLLSSAGSQFTESQVLASFEVAFLEIESVTLIKCYMKQLLQGLEHCHSRGIMHRD MKGSNLLIDSNGILKIADFGLATFCKPSDDQPLTSRVVTLWYRPPELLLGSTKYGVEVDLWSSGCILAELFNGKPIMPGRTEVEQIHKIFKLCGSPSDEY WKTSKVSHNTVFKPQQPYKRRVVETFKDMIPSSAMALLEMLLALEPEDRGSATSALTSEFFTTEPLPCDPSSLPTYPPSKEFDVKFREDEAKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09600			Protein kinase superfamily pro...		Lus10000170 [exp]	0	1
					Lus10019151 [exp]	5.6	0.8852
AT3G44970			Cytochrome P450 superfamily pr...		Lus10013060 [exp]	7.9	0.8843
AT2G23945			Eukaryotic aspartyl protease f...		Lus10031113 [exp]	9.2	0.8825
					Lus10021874 [exp]	9.4	0.8196
					Lus10009892 [exp]	11.8	0.8766
					Lus10012079 [exp]	12.0	0.8768
AT5G11090			serine-rich protein-related (....		Lus10008811 [exp]	13.0	0.6747
AT4G39830			Cupredoxin superfamily protein...		Lus10009603 [exp]	16.0	0.8639
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10023446 [exp]	16.3	0.8712
AT5G44390			FAD-binding Berberine family p...		Lus10042382 [exp]	17.5	0.8542

Compare expression of checked genes

Lus10000170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.