Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22950 131 / 4e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G18210 125 / 8e-35 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G48700 108 / 5e-29 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43660 97 / 5e-24 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G48740 92 / 5e-22 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035445 [exp] 305 / 8e-99 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10031064 [exp] 212 / 3e-68 AT3G18210 433 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G043100 [exp] 152 / 2e-45 AT3G18210 554 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.012G051200 [exp] 149 / 2e-43 AT3G18210 531 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G125800 [exp] 144 / 3e-42 AT3G18210 452 / 3e-159 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10000171 pacid=23144913 polypeptide=Lus10000171 locus=Lus10000171.g ID=Lus10000171.BGIv1.0 annot-version=v1.0 ATGGATAGCTCTACTGGTTTCCATGTTGATGATTCAGAAGTAACCTTGAATGTTTGCTTGGGCAAGGATTTTCTTGGAGGGGAATTGTACTTTCGCGGTG CTCGTTGCGAGAAACATGTGAATATTATGACCCATCCAGAGGAAATAGGGGATTACATCCACCGTGCAGGACGTGCAGTTCTTCATAGAGGACGCCATAG GCACGGGGCTAGAGCAACGACTTCCGGACATCGTTTAAACCTAATTCTATGGTGTAGAAGGGAGTTGAAGAAGTACAAAACAGACTTCTCGAGCTGGTGT GGTGAATGCCTCCGTCGAAAAAAGGAAAGACAGCGCATGACAATCGCATCAACCAAAATGGTAACCACTCTCTTTAAGAGTTTTTCATTCATTCGTCATC TAAATTCCCAGGTACCAATGTCAAAATATCCTTCTTTCCTTGCAGGAACTGTTGAAGCGGGACGGTATTTCTTCTACATCCTGAAACCTTTGTATGCTCG ATTAAGCCCCGTCTAG
AA sequence Show only first row Show all	>Lus10000171 pacid=23144913 polypeptide=Lus10000171 locus=Lus10000171.g ID=Lus10000171.BGIv1.0 annot-version=v1.0 MDSSTGFHVDDSEVTLNVCLGKDFLGGELYFRGARCEKHVNIMTHPEEIGDYIHRAGRAVLHRGRHRHGARATTSGHRLNLILWCRRELKKYKTDFSSWC GECLRRKKERQRMTIASTKMVTTLFKSFSFIRHLNSQVPMSKYPSFLAGTVEAGRYFFYILKPLYARLSPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22950			2-oxoglutarate (2OG) and Fe(II...		Lus10000171 [exp]	0	1
AT5G46920			Intron maturase, type II famil...		Lus10003019 [exp]	1.4	0.8132
AT4G18905			Transducin/WD40 repeat-like su...		Lus10004536 [exp]	2.0	0.7800
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000950 [exp]	4.2	0.7481
AT1G31817		NFD3	NUCLEAR FUSION DEFECTIVE 3, Ri...		Lus10012155 [exp]	6.7	0.7668
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10005310 [exp]	6.9	0.7600
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	8.0	0.7391
AT5G10370			helicase domain-containing pro...		Lus10012749 [exp]	9.2	0.7174
AT1G48320			Thioesterase superfamily prote...		Lus10043043 [exp]	11.2	0.7350
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10029014 [exp]	13.6	0.7143
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10028520 [exp]	14.0	0.7061

Compare expression of checked genes

Lus10000171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.